Added openmp USE

Package-Manager: portage-2.2.0_alpha30/cvs/Linux x86_64

4 files changed, 33 insertions, 21 deletions

diff --git a/sci-biology/abyss/ChangeLog b/sci-biology/abyss/ChangeLog
index e59426515802..97fbb797fcc7 100644
--- a/sci-biology/abyss/ChangeLog
+++ b/sci-biology/abyss/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/abyss
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.9 2011/04/28 14:04:23 xarthisius Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.10 2011/04/28 15:01:05 jlec Exp $
+
+  28 Apr 2011; Justin Lecher <jlec@gentoo.org> abyss-1.2.3.ebuild,
+  abyss-1.2.7.ebuild:
+  Added openmp USE
 
 *abyss-1.2.7 (28 Apr 2011)
 
diff --git a/sci-biology/abyss/Manifest b/sci-biology/abyss/Manifest
index 8b782230926d..3526d4ac74df 100644
--- a/sci-biology/abyss/Manifest
+++ b/sci-biology/abyss/Manifest
@@ -3,16 +3,14 @@ Hash: SHA1
 
 DIST abyss-1.2.3.tar.gz 313587 RMD160 a8f9b54a8fc4ab58f372b25183e806abe5a7eea4 SHA1 cebe61a38f13ce822fb3bc719681858e31b8a6e7 SHA256 d4039cc4cd44ebdcbf3107e6d1e80380dfe3817c64a74d8ac64bc717f07e4fd5
 DIST abyss-1.2.7.tar.gz 467831 RMD160 0dbf424fe8c28e0a5dc88cbcef4d1ba79b4924b3 SHA1 84708296878ef0be2c6eedcba9fbf74ade08227a SHA256 2c3bc0b6046dbbfcb9298f91314c4a2979886009a5d5d68178871e3a8b1d11c2
-EBUILD abyss-1.2.3.ebuild 690 RMD160 8d25904a05f26709bb531297fb4eebc521aa4ca1 SHA1 dd547bea8d99cafd583275bddc7462df74ecfae3 SHA256 c3bcc9cefaa57c58e60fdf3a0dca616be93a44474a97a6c606d643dca0d65be1
-EBUILD abyss-1.2.7.ebuild 846 RMD160 d592b38025e7d686124b599997072815ac0ccf3b SHA1 7f2b464b3463b0d73edd659b433d83849749349b SHA256 dd1f487846f08a43895990d94da01c0dc06969ced3e29cf9f574ee6dc8776dcb
-MISC ChangeLog 1491 RMD160 f857bac41728b655611513dab9ff335b1e3b2d5b SHA1 206d8d2040f993cff7cbee6220fa6724ee003213 SHA256 4a615ab0744bb6c3a76abcfae4c238b221baec3374ad882664ec7d93b31e9014
+EBUILD abyss-1.2.3.ebuild 749 RMD160 4554e0238553a3868ddd06dd01381b851ac45e8e SHA1 3f50e2f526b7a40cb0dc5bba84d254f8bc0ecf64 SHA256 3f086d6e193f45f68640056ab025c29709f2db70b108647c506198f860526081
+EBUILD abyss-1.2.7.ebuild 869 RMD160 444d2c991c15d4b5a976e4aed7cd660a97bedd19 SHA1 391ccdc04f83a8e6c21b257894570893a257583c SHA256 7e0052aca03cf180b839de88f367c0c8f39cb913bea27f4faa781dcb448bbf65
+MISC ChangeLog 1595 RMD160 74a40d6dfddb2069f078a622b0180563e9c069c5 SHA1 ad0ab0ed627314aec641fdfc42cadeeca858e3d1 SHA256 c24720afda2de0cbe9a88714c9cc779b12441a3e76930c6c2ead3933a1599bad
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
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diff --git a/sci-biology/abyss/abyss-1.2.3.ebuild b/sci-biology/abyss/abyss-1.2.3.ebuild
index eea4ed14f976..c625096bd68f 100644
--- a/sci-biology/abyss/abyss-1.2.3.ebuild
+++ b/sci-biology/abyss/abyss-1.2.3.ebuild
@@ -1,11 +1,12 @@
 # Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.3.ebuild,v 1.3 2011/02/11 13:04:19 hwoarang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.3.ebuild,v 1.4 2011/04/28 15:01:05 jlec Exp $
 
 EAPI="2"
 
+
 DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
-HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss"
+HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
 SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
 
 LICENSE="abyss"
@@ -13,13 +14,18 @@ SLOT="0"
 IUSE="+mpi"
 KEYWORDS="amd64 x86"
 
-DEPEND="dev-cpp/sparsehash
+DEPEND="
+	dev-cpp/sparsehash
 	mpi? ( virtual/mpi )"
 RDEPEND="${DEPEND}"
 
 # todo: --enable-maxk=N configure option
 # todo: fix automagic mpi toggling
 
+src_prepare() {
+	sed 's:-Werror::g' -i configure || die
+}
+
 src_install() {
 	einstall || die
 }
diff --git a/sci-biology/abyss/abyss-1.2.7.ebuild b/sci-biology/abyss/abyss-1.2.7.ebuild
index 95f18eb1550b..2bfafaaab3a9 100644
--- a/sci-biology/abyss/abyss-1.2.7.ebuild
+++ b/sci-biology/abyss/abyss-1.2.7.ebuild
@@ -1,26 +1,25 @@
 # Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.7.ebuild,v 1.1 2011/04/28 14:04:23 xarthisius Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.7.ebuild,v 1.2 2011/04/28 15:01:05 jlec Exp $
 
-EAPI="2"
+EAPI="4"
 
-inherit autotools base
+inherit autotools
 
 DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
-HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss"
+HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
 SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
 
 LICENSE="abyss"
 SLOT="0"
-IUSE="+mpi"
-KEYWORDS="~amd64 ~x86"
+IUSE="+mpi openmp"
+KEYWORDS="amd64 x86"
 
-DEPEND="dev-cpp/sparsehash
+DEPEND="
+	dev-cpp/sparsehash
 	mpi? ( virtual/mpi )"
 RDEPEND="${DEPEND}"
 
-DOCS=( ChangeLog README )
-
 # todo: --enable-maxk=N configure option
 # todo: fix automagic mpi toggling
 
@@ -29,3 +28,8 @@ src_prepare() {
 	sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die
 	eautoreconf
 }
+
+src_configure() {
+	econf \
+		$(use_enable openmp)
+}