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# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.7.ebuild,v 1.1 2011/04/28 14:04:23 xarthisius Exp $
EAPI="2"
inherit autotools base
DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss"
SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
LICENSE="abyss"
SLOT="0"
IUSE="+mpi"
KEYWORDS="~amd64 ~x86"
DEPEND="dev-cpp/sparsehash
mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"
DOCS=( ChangeLog README )
# todo: --enable-maxk=N configure option
# todo: fix automagic mpi toggling
src_prepare() {
sed -i -e "s/-Werror//" configure.ac || die #365195
sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die
eautoreconf
}
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