Bump.

(Portage version: 2.1_pre5-r2)

3 files changed, 68 insertions, 2 deletions

diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog
index ca1dfe82adb0..bb9060a083ae 100644
--- a/sci-biology/t-coffee/ChangeLog
+++ b/sci-biology/t-coffee/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/t-coffee
-# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.12 2005/12/08 19:52:39 ribosome Exp $
+# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.13 2006/03/07 21:41:22 spyderous Exp $
+
+*t-coffee-3.84 (07 Mar 2006)
+
+  07 Mar 2006; Donnie Berkholz <spyderous@gentoo.org>;
+  +t-coffee-3.84.ebuild:
+  Bump.
 
   08 Dec 2005; Olivier Fisette <ribosome@gentoo.org> -t-coffee-3.18.ebuild:
   Pruning old version.
diff --git a/sci-biology/t-coffee/files/digest-t-coffee-3.84 b/sci-biology/t-coffee/files/digest-t-coffee-3.84
new file mode 100644
index 000000000000..bc927afd27fc
--- /dev/null
+++ b/sci-biology/t-coffee/files/digest-t-coffee-3.84
@@ -0,0 +1,3 @@
+MD5 f8f74db4132573b0ec8790e64c4cda4c T-COFFEE_distribution_Version_3.84.tar.gz 1625217
+RMD160 cda295fd0c2c432c8f802739a3748fcb01f40389 T-COFFEE_distribution_Version_3.84.tar.gz 1625217
+SHA256 1c062fe67b1817570fdce8f57999ce637863cc91b4feb91053ef805cc3f48eab T-COFFEE_distribution_Version_3.84.tar.gz 1625217
diff --git a/sci-biology/t-coffee/t-coffee-3.84.ebuild b/sci-biology/t-coffee/t-coffee-3.84.ebuild
new file mode 100644
index 000000000000..100840872c61
--- /dev/null
+++ b/sci-biology/t-coffee/t-coffee-3.84.ebuild
@@ -0,0 +1,57 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-3.84.ebuild,v 1.1 2006/03/07 21:41:22 spyderous Exp $
+
+inherit toolchain-funcs
+
+DESCRIPTION="A multiple sequence alignment package"
+LICENSE="t-coffee"
+HOMEPAGE="http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html"
+SRC_URI="http://igs-server.cnrs-mrs.fr/~cnotred/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
+
+SLOT="0"
+IUSE=""
+KEYWORDS="~ppc ~x86"
+
+RESTRICT="nomirror"
+
+DEPEND="sci-biology/clustalw"
+
+TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
+S="${TCDIR}/t_coffee_source"
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+	sed -e "s/CC	= cc/CC	= $(tc-getCC) ${CFLAGS}/" -i makefile || die \
+		"Failed to patch makefile."
+}
+
+die_compile() {
+	echo
+	eerror "If you experience an internal compiler error (consult the above"
+	eerror "messages), try compiling t-coffee using very modest compiler flags."
+	eerror "See bug #114745 on the Gentoo Bugzilla for more details."
+	die "Compilation failed"
+}
+
+src_compile() {
+	make all || die_compile
+}
+
+src_install() {
+	cd "${TCDIR}"/bin
+	dobin t_coffee || die "Failed to install program."
+	insinto /usr/share/${PN}/lib/html
+	doins ${TCDIR}/html/* || die "Failed to install HTML documentation,"
+
+	dodoc ${TCDIR}/doc/README4T-COFFEE || die \
+		"Failed to install basic documentation."
+	insinto /usr/share/doc/${PF}
+	doins ${TCDIR}/doc/t_coffee{_doc.{doc,pdf},.pdf} || die \
+		"Failed to install manuals and articles."
+	doins ${TCDIR}/doc/*.txt || die "Failed to install documentation."
+
+	insinto /usr/share/${PN}/example
+	doins ${TCDIR}/example/* || die "Failed to install example files."
+}