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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
inherit eutils toolchain-funcs versionator
DESCRIPTION="Intelligent algorithms for DNA searches"
HOMEPAGE="http://www.ebi.ac.uk/Wise2/"
SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/${PN}2/${PN}$(delete_version_separator 3).tar.gz
https://dev.gentoo.org/~mgorny/dist/${P}-patchset.tar.bz2"
LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="doc static-libs"
RDEPEND="~sci-biology/hmmer-2.3.2"
DEPEND="
${RDEPEND}
app-shells/tcsh
dev-lang/perl
virtual/latex-base"
S="${WORKDIR}"/${PN}$(delete_version_separator 3)
src_prepare() {
epatch \
"${WORKDIR}"/${P}-patchset/${P}-glibc-2.10.patch \
"${WORKDIR}"/${P}-patchset/${P}-cflags.patch
cd "${S}"/docs || die
cat "${S}"/src/models/*.tex "${S}"/src/dynlibsrc/*.tex | perl gettex.pl > temp.tex || die
cat wise2api.tex temp.tex apiend.tex > api.tex || die
epatch "${WORKDIR}"/${P}-patchset/${PN}-api.tex.patch
}
src_compile() {
emake \
-C src \
CC="$(tc-getCC)" \
all
if use doc; then
cd "${S}"/docs || die
for i in api appendix dynamite wise2 wise3arch; do
latex ${i} || die
latex ${i} || die
dvips ${i}.dvi -o || die
done
fi
}
src_test() {
cd "${S}"/src || die
WISECONFIGDIR="${S}/wisecfg" emake test
}
src_install() {
dobin "${S}"/src/bin/* "${S}"/src/dynlibsrc/testgendb
use static-libs && \
dolib.a \
"${S}"/src/base/libwisebase.a \
"${S}"/src/dynlibsrc/libdyna.a \
"${S}"/src/models/libmodel.a
insinto /usr/share/${PN}
doins -r "${S}"/wisecfg
if use doc; then
insinto /usr/share/doc/${PF}
doins "${S}"/docs/*.ps
fi
newenvd "${WORKDIR}"/${P}-patchset/${PN}-env 24wise || die "Failed to install env file"
}
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