diff options
Diffstat (limited to 'sci-biology/allpathslg/allpathslg-52488-r2.ebuild')
| -rw-r--r-- | sci-biology/allpathslg/allpathslg-52488-r2.ebuild | 46 |
1 files changed, 0 insertions, 46 deletions
diff --git a/sci-biology/allpathslg/allpathslg-52488-r2.ebuild b/sci-biology/allpathslg/allpathslg-52488-r2.ebuild deleted file mode 100644 index cc9498b65f70..000000000000 --- a/sci-biology/allpathslg/allpathslg-52488-r2.ebuild +++ /dev/null @@ -1,46 +0,0 @@ -# Copyright 1999-2018 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit autotools flag-o-matic toolchain-funcs - -DESCRIPTION="De novo assembly of whole-genome shotgun microreads" -# see also http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12 -HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd" -SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz - https://dev.gentoo.org/~mgorny/dist/${P}-patchset.tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" - -RDEPEND=" - !sci-biology/allpaths - !sci-biology/vaal" -DEPEND=" - ${RDEPEND} - dev-libs/boost:=" - -PATCHES=( - "${WORKDIR}"/${P}-patchset/${P}_fix-buildsystem.patch - "${WORKDIR}"/${P}-patchset/${P}_remove-namespace-std.patch - "${FILESDIR}"/${P}-gcc7.patch -) - -pkg_pretend() { - [[ ${MERGE_TYPE} != binary ]] && tc-check-openmp -} - -pkg_setup() { - [[ ${MERGE_TYPE} != binary ]] && tc-check-openmp -} - -src_prepare() { - default - - # Fix building with glibc-2.27, bug #647340 - sed -i -e 's/-mieee-fp//' configure.ac || die - - eautoreconf -} |