diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2015-08-24 12:47:45 +0200 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2015-08-24 12:49:19 +0200 |
| commit | eaaface92ee81f30a6ac66fe7acbcc42c00dc450 (patch) | |
| tree | 6a380aa33005e1997c9dbe6f1c00520274543303 /sci-biology | |
| parent | sci-libs/ViSP: Disable Coin3D to avoid automagic. Bug #558498. (diff) | |
| download | gentoo-eaaface92ee81f30a6ac66fe7acbcc42c00dc450.tar.gz gentoo-eaaface92ee81f30a6ac66fe7acbcc42c00dc450.tar.bz2 gentoo-eaaface92ee81f30a6ac66fe7acbcc42c00dc450.zip | |
Use https by default
Convert all URLs for sites supporting encrypted connections from http to https
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Diffstat (limited to 'sci-biology')
165 files changed, 165 insertions, 165 deletions
diff --git a/sci-biology/ApE/metadata.xml b/sci-biology/ApE/metadata.xml index 4252fbfae02e..093ae3fde3e0 100644 --- a/sci-biology/ApE/metadata.xml +++ b/sci-biology/ApE/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer> <email>je_fro@gentoo.org</email> diff --git a/sci-biology/GBrowse/metadata.xml b/sci-biology/GBrowse/metadata.xml index 32b15c723f9d..0f0451e324e1 100644 --- a/sci-biology/GBrowse/metadata.xml +++ b/sci-biology/GBrowse/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/aaindex/metadata.xml b/sci-biology/aaindex/metadata.xml index ccb567e64e02..4829597f3fa3 100644 --- a/sci-biology/aaindex/metadata.xml +++ b/sci-biology/aaindex/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/abyss/metadata.xml b/sci-biology/abyss/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/abyss/metadata.xml +++ b/sci-biology/abyss/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/allpathslg/metadata.xml b/sci-biology/allpathslg/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/allpathslg/metadata.xml +++ b/sci-biology/allpathslg/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/amap/metadata.xml b/sci-biology/amap/metadata.xml index 34294c65ca04..7a5b00148b39 100644 --- a/sci-biology/amap/metadata.xml +++ b/sci-biology/amap/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/amos/metadata.xml b/sci-biology/amos/metadata.xml index a73ee9189a98..661f1f979a37 100644 --- a/sci-biology/amos/metadata.xml +++ b/sci-biology/amos/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/arb/arb-5.1-r1.ebuild b/sci-biology/arb/arb-5.1-r1.ebuild index 7db2d798ec55..ed0937aed6ee 100644 --- a/sci-biology/arb/arb-5.1-r1.ebuild +++ b/sci-biology/arb/arb-5.1-r1.ebuild @@ -11,7 +11,7 @@ HOMEPAGE="http://www.arb-home.de/" SRC_URI=" http://download.arb-home.de/release/arb_${PV}/arbsrc.tgz -> ${P}.tgz mirror://gentoo/${P}-glibc2.10.patch.bz2 - http://dev.gentoo.org/~jlec/${P}-linker.patch.bz2" + https://dev.gentoo.org/~jlec/${P}-linker.patch.bz2" LICENSE="arb" SLOT="0" diff --git a/sci-biology/arb/arb-5.2.ebuild b/sci-biology/arb/arb-5.2.ebuild index 97f7dc5dfbdd..9c33732dc92c 100644 --- a/sci-biology/arb/arb-5.2.ebuild +++ b/sci-biology/arb/arb-5.2.ebuild @@ -10,7 +10,7 @@ DESCRIPTION="Tools for DNA/RNA sequence database handling and data analysis, phy HOMEPAGE="http://www.arb-home.de/" SRC_URI=" http://download.arb-home.de/release/arb_${PV}/arbsrc.tgz -> ${P}.tgz - http://dev.gentoo.org/~jlec/distfiles/${P}-linker.patch.bz2" + https://dev.gentoo.org/~jlec/distfiles/${P}-linker.patch.bz2" SLOT="0" LICENSE="arb" diff --git a/sci-biology/arb/arb-5.3.ebuild b/sci-biology/arb/arb-5.3.ebuild index 97f8b78ddca2..b0a05db2ce8c 100644 --- a/sci-biology/arb/arb-5.3.ebuild +++ b/sci-biology/arb/arb-5.3.ebuild @@ -10,7 +10,7 @@ DESCRIPTION="Tools for DNA/RNA sequence database handling and data analysis, phy HOMEPAGE="http://www.arb-home.de/" SRC_URI=" http://download.arb-home.de/release/arb_${PV}/arbsrc.tgz -> ${P}.tgz - http://dev.gentoo.org/~jlec/distfiles/${P}-linker.patch.xz" + https://dev.gentoo.org/~jlec/distfiles/${P}-linker.patch.xz" SLOT="0" LICENSE="arb" diff --git a/sci-biology/arb/metadata.xml b/sci-biology/arb/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/arb/metadata.xml +++ b/sci-biology/arb/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/ariadne/metadata.xml b/sci-biology/ariadne/metadata.xml index 3e55c00f9d7b..6a0a4590887b 100644 --- a/sci-biology/ariadne/metadata.xml +++ b/sci-biology/ariadne/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/augustus/metadata.xml b/sci-biology/augustus/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/augustus/metadata.xml +++ b/sci-biology/augustus/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/bamtools/metadata.xml b/sci-biology/bamtools/metadata.xml index f2c00c1fdd0c..1a68503bdc85 100644 --- a/sci-biology/bamtools/metadata.xml +++ b/sci-biology/bamtools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <herd>proxy-maintainers</herd> diff --git a/sci-biology/beast-mcmc/beast-mcmc-1.7.5.ebuild b/sci-biology/beast-mcmc/beast-mcmc-1.7.5.ebuild index 35993562814c..87f177cd7dee 100644 --- a/sci-biology/beast-mcmc/beast-mcmc-1.7.5.ebuild +++ b/sci-biology/beast-mcmc/beast-mcmc-1.7.5.ebuild @@ -20,7 +20,7 @@ MY_P=BEASTv${PV} DESCRIPTION="Bayesian MCMC of Evolution & Phylogenetics using Molecular Sequences" HOMEPAGE="http://code.google.com/p/beast-mcmc/" #SRC_URI="" -SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" LICENSE="LGPL-3" SLOT="0" diff --git a/sci-biology/beast-mcmc/metadata.xml b/sci-biology/beast-mcmc/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/beast-mcmc/metadata.xml +++ b/sci-biology/beast-mcmc/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/bedtools/metadata.xml b/sci-biology/bedtools/metadata.xml index 6edffa4a6dc3..3ed9e4f79dae 100644 --- a/sci-biology/bedtools/metadata.xml +++ b/sci-biology/bedtools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <herd>proxy-maintainers</herd> diff --git a/sci-biology/bfast/metadata.xml b/sci-biology/bfast/metadata.xml index 45107864e217..0630beec2165 100644 --- a/sci-biology/bfast/metadata.xml +++ b/sci-biology/bfast/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/biogrep/metadata.xml b/sci-biology/biogrep/metadata.xml index 173e3b48f53e..03c4728af269 100644 --- a/sci-biology/biogrep/metadata.xml +++ b/sci-biology/biogrep/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <maintainer> diff --git a/sci-biology/biojava/metadata.xml b/sci-biology/biojava/metadata.xml index 0a18364544e8..7f43ec214cc7 100644 --- a/sci-biology/biojava/metadata.xml +++ b/sci-biology/biojava/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <herd>java</herd> diff --git a/sci-biology/bioperl-db/metadata.xml b/sci-biology/bioperl-db/metadata.xml index 642468c809b7..36edac8bc95c 100644 --- a/sci-biology/bioperl-db/metadata.xml +++ b/sci-biology/bioperl-db/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/bioperl-network/metadata.xml b/sci-biology/bioperl-network/metadata.xml index 045af7cc6148..2f001d5643e3 100644 --- a/sci-biology/bioperl-network/metadata.xml +++ b/sci-biology/bioperl-network/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/bioperl-run/metadata.xml b/sci-biology/bioperl-run/metadata.xml index f8c7078a2813..568fccee8607 100644 --- a/sci-biology/bioperl-run/metadata.xml +++ b/sci-biology/bioperl-run/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/bioperl/metadata.xml b/sci-biology/bioperl/metadata.xml index 210ba364d45f..8ee69a9ceae5 100644 --- a/sci-biology/bioperl/metadata.xml +++ b/sci-biology/bioperl/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <use> diff --git a/sci-biology/biopython/metadata.xml b/sci-biology/biopython/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/biopython/metadata.xml +++ b/sci-biology/biopython/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/bioruby/metadata.xml b/sci-biology/bioruby/metadata.xml index d4648212cbad..888b33ed05c6 100644 --- a/sci-biology/bioruby/metadata.xml +++ b/sci-biology/bioruby/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/biosql/metadata.xml b/sci-biology/biosql/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/biosql/metadata.xml +++ b/sci-biology/biosql/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/blat/metadata.xml b/sci-biology/blat/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/blat/metadata.xml +++ b/sci-biology/blat/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/blossoc/metadata.xml b/sci-biology/blossoc/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/blossoc/metadata.xml +++ b/sci-biology/blossoc/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/bowtie/metadata.xml b/sci-biology/bowtie/metadata.xml index e493417070fb..6b293c04605c 100644 --- a/sci-biology/bowtie/metadata.xml +++ b/sci-biology/bowtie/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/bwa/metadata.xml b/sci-biology/bwa/metadata.xml index 97a33fbf5c42..b9b42f9174af 100644 --- a/sci-biology/bwa/metadata.xml +++ b/sci-biology/bwa/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/cd-hit/metadata.xml b/sci-biology/cd-hit/metadata.xml index bd5607ab16b5..0f09fa4c33a6 100644 --- a/sci-biology/cd-hit/metadata.xml +++ b/sci-biology/cd-hit/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/clustal-omega/metadata.xml b/sci-biology/clustal-omega/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/clustal-omega/metadata.xml +++ b/sci-biology/clustal-omega/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/clustalw-mpi/metadata.xml b/sci-biology/clustalw-mpi/metadata.xml index 905eba1a07b8..541a143720fe 100644 --- a/sci-biology/clustalw-mpi/metadata.xml +++ b/sci-biology/clustalw-mpi/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <use> diff --git a/sci-biology/clustalw/metadata.xml b/sci-biology/clustalw/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/clustalw/metadata.xml +++ b/sci-biology/clustalw/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/clustalx/metadata.xml b/sci-biology/clustalx/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/clustalx/metadata.xml +++ b/sci-biology/clustalx/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/consed/metadata.xml b/sci-biology/consed/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/consed/metadata.xml +++ b/sci-biology/consed/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/cufflinks/metadata.xml b/sci-biology/cufflinks/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/cufflinks/metadata.xml +++ b/sci-biology/cufflinks/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/cutg/cutg-160-r1.ebuild b/sci-biology/cutg/cutg-160-r1.ebuild index 46163bc2a80f..9c30532281ac 100644 --- a/sci-biology/cutg/cutg-160-r1.ebuild +++ b/sci-biology/cutg/cutg-160-r1.ebuild @@ -6,7 +6,7 @@ EAPI=5 DESCRIPTION="Codon usage tables calculated from GenBank" HOMEPAGE="http://www.kazusa.or.jp/codon/" -SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" SLOT="0" LICENSE="public-domain" diff --git a/sci-biology/cutg/metadata.xml b/sci-biology/cutg/metadata.xml index 59b110912ca6..0bb97ff1bb0f 100644 --- a/sci-biology/cutg/metadata.xml +++ b/sci-biology/cutg/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/dialign-tx/metadata.xml b/sci-biology/dialign-tx/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/dialign-tx/metadata.xml +++ b/sci-biology/dialign-tx/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/dialign2/metadata.xml b/sci-biology/dialign2/metadata.xml index 7bc6ee8ea837..c96cc8f6b0fc 100644 --- a/sci-biology/dialign2/metadata.xml +++ b/sci-biology/dialign2/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer> <email>jlec@gentoo.org</email> diff --git a/sci-biology/diya/metadata.xml b/sci-biology/diya/metadata.xml index d6b9de8b20a7..ecde0dac7cd7 100644 --- a/sci-biology/diya/metadata.xml +++ b/sci-biology/diya/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/elph/metadata.xml b/sci-biology/elph/metadata.xml index 469879ba8f5b..274bbbb86586 100644 --- a/sci-biology/elph/metadata.xml +++ b/sci-biology/elph/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/embassy-cbstools/metadata.xml b/sci-biology/embassy-cbstools/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-cbstools/metadata.xml +++ b/sci-biology/embassy-cbstools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-clustalomega/metadata.xml b/sci-biology/embassy-clustalomega/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-clustalomega/metadata.xml +++ b/sci-biology/embassy-clustalomega/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-domainatrix/metadata.xml b/sci-biology/embassy-domainatrix/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-domainatrix/metadata.xml +++ b/sci-biology/embassy-domainatrix/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-domalign/metadata.xml b/sci-biology/embassy-domalign/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-domalign/metadata.xml +++ b/sci-biology/embassy-domalign/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-domsearch/metadata.xml b/sci-biology/embassy-domsearch/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-domsearch/metadata.xml +++ b/sci-biology/embassy-domsearch/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-emnu/metadata.xml b/sci-biology/embassy-emnu/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-emnu/metadata.xml +++ b/sci-biology/embassy-emnu/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-esim4/metadata.xml b/sci-biology/embassy-esim4/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-esim4/metadata.xml +++ b/sci-biology/embassy-esim4/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-hmmer/metadata.xml b/sci-biology/embassy-hmmer/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-hmmer/metadata.xml +++ b/sci-biology/embassy-hmmer/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-iprscan/metadata.xml b/sci-biology/embassy-iprscan/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-iprscan/metadata.xml +++ b/sci-biology/embassy-iprscan/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-meme/metadata.xml b/sci-biology/embassy-meme/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-meme/metadata.xml +++ b/sci-biology/embassy-meme/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-memenew/metadata.xml b/sci-biology/embassy-memenew/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-memenew/metadata.xml +++ b/sci-biology/embassy-memenew/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-mira/metadata.xml b/sci-biology/embassy-mira/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-mira/metadata.xml +++ b/sci-biology/embassy-mira/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-mse/metadata.xml b/sci-biology/embassy-mse/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-mse/metadata.xml +++ b/sci-biology/embassy-mse/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-phylipnew/metadata.xml b/sci-biology/embassy-phylipnew/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-phylipnew/metadata.xml +++ b/sci-biology/embassy-phylipnew/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-signature/metadata.xml b/sci-biology/embassy-signature/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-signature/metadata.xml +++ b/sci-biology/embassy-signature/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-structure/metadata.xml b/sci-biology/embassy-structure/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-structure/metadata.xml +++ b/sci-biology/embassy-structure/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-topo/metadata.xml b/sci-biology/embassy-topo/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-topo/metadata.xml +++ b/sci-biology/embassy-topo/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy-vienna/metadata.xml b/sci-biology/embassy-vienna/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy-vienna/metadata.xml +++ b/sci-biology/embassy-vienna/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/embassy/metadata.xml b/sci-biology/embassy/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/embassy/metadata.xml +++ b/sci-biology/embassy/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/emboss/metadata.xml b/sci-biology/emboss/metadata.xml index 3af936dc1564..00f586eeda16 100644 --- a/sci-biology/emboss/metadata.xml +++ b/sci-biology/emboss/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/eugene/metadata.xml b/sci-biology/eugene/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/eugene/metadata.xml +++ b/sci-biology/eugene/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/exonerate/metadata.xml b/sci-biology/exonerate/metadata.xml index 711d805d77e7..ff9dbd7b15d3 100644 --- a/sci-biology/exonerate/metadata.xml +++ b/sci-biology/exonerate/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <maintainer> diff --git a/sci-biology/express/metadata.xml b/sci-biology/express/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/express/metadata.xml +++ b/sci-biology/express/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/fasta/metadata.xml b/sci-biology/fasta/metadata.xml index b98c9919d241..edc83bb65f9e 100644 --- a/sci-biology/fasta/metadata.xml +++ b/sci-biology/fasta/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <maintainer> diff --git a/sci-biology/fasttree/metadata.xml b/sci-biology/fasttree/metadata.xml index 5ee1f51e55df..97f55457dae8 100644 --- a/sci-biology/fasttree/metadata.xml +++ b/sci-biology/fasttree/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <use> diff --git a/sci-biology/finchtv/metadata.xml b/sci-biology/finchtv/metadata.xml index e487463fc00b..09e954e48953 100644 --- a/sci-biology/finchtv/metadata.xml +++ b/sci-biology/finchtv/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <maintainer> diff --git a/sci-biology/flower/metadata.xml b/sci-biology/flower/metadata.xml index dcaae2095b0e..1b21b5edd6dc 100644 --- a/sci-biology/flower/metadata.xml +++ b/sci-biology/flower/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>haskell</herd> <maintainer> diff --git a/sci-biology/foldingathome/metadata.xml b/sci-biology/foldingathome/metadata.xml index 63d767b84f60..f5376ab7c369 100644 --- a/sci-biology/foldingathome/metadata.xml +++ b/sci-biology/foldingathome/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <maintainer> diff --git a/sci-biology/gatk/metadata.xml b/sci-biology/gatk/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/gatk/metadata.xml +++ b/sci-biology/gatk/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/gibbs/metadata.xml b/sci-biology/gibbs/metadata.xml index c31e2db70216..4af848231d6d 100644 --- a/sci-biology/gibbs/metadata.xml +++ b/sci-biology/gibbs/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/glimmer/metadata.xml b/sci-biology/glimmer/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/glimmer/metadata.xml +++ b/sci-biology/glimmer/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/glimmerhmm/metadata.xml b/sci-biology/glimmerhmm/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/glimmerhmm/metadata.xml +++ b/sci-biology/glimmerhmm/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/gmap/metadata.xml b/sci-biology/gmap/metadata.xml index 7d62e2f44e07..1ca1c474ce0b 100644 --- a/sci-biology/gmap/metadata.xml +++ b/sci-biology/gmap/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <use> diff --git a/sci-biology/goby-cpp/metadata.xml b/sci-biology/goby-cpp/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/goby-cpp/metadata.xml +++ b/sci-biology/goby-cpp/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/goby/metadata.xml b/sci-biology/goby/metadata.xml index 3bc02ac6b32e..34b5ca85dc0e 100644 --- a/sci-biology/goby/metadata.xml +++ b/sci-biology/goby/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <use> diff --git a/sci-biology/hmmer/metadata.xml b/sci-biology/hmmer/metadata.xml index 66fa76626615..a216003f3d90 100644 --- a/sci-biology/hmmer/metadata.xml +++ b/sci-biology/hmmer/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <use> diff --git a/sci-biology/iedera/metadata.xml b/sci-biology/iedera/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/iedera/metadata.xml +++ b/sci-biology/iedera/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/infernal/metadata.xml b/sci-biology/infernal/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/infernal/metadata.xml +++ b/sci-biology/infernal/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/iqpnni/metadata.xml b/sci-biology/iqpnni/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/iqpnni/metadata.xml +++ b/sci-biology/iqpnni/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/kalign/metadata.xml b/sci-biology/kalign/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/kalign/metadata.xml +++ b/sci-biology/kalign/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/lagan/metadata.xml b/sci-biology/lagan/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/lagan/metadata.xml +++ b/sci-biology/lagan/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/last/metadata.xml b/sci-biology/last/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/last/metadata.xml +++ b/sci-biology/last/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/mafft/metadata.xml b/sci-biology/mafft/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/mafft/metadata.xml +++ b/sci-biology/mafft/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/mammoth/metadata.xml b/sci-biology/mammoth/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/mammoth/metadata.xml +++ b/sci-biology/mammoth/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/maq/metadata.xml b/sci-biology/maq/metadata.xml index 79ebcc09421b..631ae3776371 100644 --- a/sci-biology/maq/metadata.xml +++ b/sci-biology/maq/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/maqview/metadata.xml b/sci-biology/maqview/metadata.xml index 79ebcc09421b..631ae3776371 100644 --- a/sci-biology/maqview/metadata.xml +++ b/sci-biology/maqview/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/mauve/metadata.xml b/sci-biology/mauve/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/mauve/metadata.xml +++ b/sci-biology/mauve/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/mauvealigner/metadata.xml b/sci-biology/mauvealigner/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/mauvealigner/metadata.xml +++ b/sci-biology/mauvealigner/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/mcl/metadata.xml b/sci-biology/mcl/metadata.xml index aa6527e1e839..0a1130a3c53b 100644 --- a/sci-biology/mcl/metadata.xml +++ b/sci-biology/mcl/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <use> diff --git a/sci-biology/meme/metadata.xml b/sci-biology/meme/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/meme/metadata.xml +++ b/sci-biology/meme/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/metadata.xml b/sci-biology/metadata.xml index 7a808874b6e6..14ccb8851169 100644 --- a/sci-biology/metadata.xml +++ b/sci-biology/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE catmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE catmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <catmetadata> <longdescription lang="en"> The sci-biology category contains software that can be used diff --git a/sci-biology/mira/metadata.xml b/sci-biology/mira/metadata.xml index a2c7c1a0a6a7..db0cf39d2237 100644 --- a/sci-biology/mira/metadata.xml +++ b/sci-biology/mira/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/mosaik/metadata.xml b/sci-biology/mosaik/metadata.xml index 4dfd5b0bdafa..e33216655e64 100644 --- a/sci-biology/mosaik/metadata.xml +++ b/sci-biology/mosaik/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/mothur/metadata.xml b/sci-biology/mothur/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/mothur/metadata.xml +++ b/sci-biology/mothur/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/mrbayes/metadata.xml b/sci-biology/mrbayes/metadata.xml index 8a6a5b986dc7..f5495320b9a7 100644 --- a/sci-biology/mrbayes/metadata.xml +++ b/sci-biology/mrbayes/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/mummer/metadata.xml b/sci-biology/mummer/metadata.xml index f82b462e1f95..979e3814da94 100644 --- a/sci-biology/mummer/metadata.xml +++ b/sci-biology/mummer/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/muscle/metadata.xml b/sci-biology/muscle/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/muscle/metadata.xml +++ b/sci-biology/muscle/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/ncbi-tools/metadata.xml b/sci-biology/ncbi-tools/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/ncbi-tools/metadata.xml +++ b/sci-biology/ncbi-tools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/newick-utils/metadata.xml b/sci-biology/newick-utils/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/newick-utils/metadata.xml +++ b/sci-biology/newick-utils/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/njplot/metadata.xml b/sci-biology/njplot/metadata.xml index 31592430880f..e0cfc5842d34 100644 --- a/sci-biology/njplot/metadata.xml +++ b/sci-biology/njplot/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/pals/metadata.xml b/sci-biology/pals/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/pals/metadata.xml +++ b/sci-biology/pals/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/paml/metadata.xml b/sci-biology/paml/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/paml/metadata.xml +++ b/sci-biology/paml/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/phrap/metadata.xml b/sci-biology/phrap/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/phrap/metadata.xml +++ b/sci-biology/phrap/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/phred/metadata.xml b/sci-biology/phred/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/phred/metadata.xml +++ b/sci-biology/phred/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/phylip/metadata.xml b/sci-biology/phylip/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/phylip/metadata.xml +++ b/sci-biology/phylip/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/phyml/metadata.xml b/sci-biology/phyml/metadata.xml index d0355f85e406..95bf48c3c8fb 100644 --- a/sci-biology/phyml/metadata.xml +++ b/sci-biology/phyml/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription lang="en"> diff --git a/sci-biology/picard/metadata.xml b/sci-biology/picard/metadata.xml index 265affea91d0..a0a308bde788 100644 --- a/sci-biology/picard/metadata.xml +++ b/sci-biology/picard/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <maintainer> diff --git a/sci-biology/picard/picard-1.103.ebuild b/sci-biology/picard/picard-1.103.ebuild index 16e71f41f2b0..262e4873f3a6 100644 --- a/sci-biology/picard/picard-1.103.ebuild +++ b/sci-biology/picard/picard-1.103.ebuild @@ -11,7 +11,7 @@ inherit java-pkg-2 java-ant-2 DESCRIPTION="Java-based command-line utilities that manipulate SAM files" HOMEPAGE="http://picard.sourceforge.net/" -SRC_URI="http://dev.gentoo.org/~ercpe/distfiles/${CATEGORY}/${PN}/${P}.tar.bz2" +SRC_URI="https://dev.gentoo.org/~ercpe/distfiles/${CATEGORY}/${PN}/${P}.tar.bz2" LICENSE="Apache-2.0" SLOT="0" diff --git a/sci-biology/piler/metadata.xml b/sci-biology/piler/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/piler/metadata.xml +++ b/sci-biology/piler/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/pilercr/metadata.xml b/sci-biology/pilercr/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/pilercr/metadata.xml +++ b/sci-biology/pilercr/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/plink/metadata.xml b/sci-biology/plink/metadata.xml index 80af0e1d0365..3c82b56f885e 100644 --- a/sci-biology/plink/metadata.xml +++ b/sci-biology/plink/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <use> diff --git a/sci-biology/poa/metadata.xml b/sci-biology/poa/metadata.xml index 65027f64ec24..1ab8f7473041 100644 --- a/sci-biology/poa/metadata.xml +++ b/sci-biology/poa/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/prank/metadata.xml b/sci-biology/prank/metadata.xml index 2cd3c04eeca0..11369741f7fe 100644 --- a/sci-biology/prank/metadata.xml +++ b/sci-biology/prank/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/primer3/metadata.xml b/sci-biology/primer3/metadata.xml index 1fbadfaf3b77..fc4a35358af4 100644 --- a/sci-biology/primer3/metadata.xml +++ b/sci-biology/primer3/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/prints/metadata.xml b/sci-biology/prints/metadata.xml index 7d2927f1d2fb..fe83d786f65d 100644 --- a/sci-biology/prints/metadata.xml +++ b/sci-biology/prints/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/probcons/metadata.xml b/sci-biology/probcons/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/probcons/metadata.xml +++ b/sci-biology/probcons/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/prodigal/metadata.xml b/sci-biology/prodigal/metadata.xml index 6e8b2ee66e66..8d831d29bb1a 100644 --- a/sci-biology/prodigal/metadata.xml +++ b/sci-biology/prodigal/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/profphd/metadata.xml b/sci-biology/profphd/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/profphd/metadata.xml +++ b/sci-biology/profphd/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/prosite/metadata.xml b/sci-biology/prosite/metadata.xml index 075d4b7bcf10..5974edbdaed1 100644 --- a/sci-biology/prosite/metadata.xml +++ b/sci-biology/prosite/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/psipred/metadata.xml b/sci-biology/psipred/metadata.xml index 655b161c218d..ff46cda4db22 100644 --- a/sci-biology/psipred/metadata.xml +++ b/sci-biology/psipred/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <maintainer> diff --git a/sci-biology/pysam/metadata.xml b/sci-biology/pysam/metadata.xml index 49afc3c3d532..7e41c1e4c5d9 100644 --- a/sci-biology/pysam/metadata.xml +++ b/sci-biology/pysam/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/qrna/metadata.xml b/sci-biology/qrna/metadata.xml index d4648212cbad..888b33ed05c6 100644 --- a/sci-biology/qrna/metadata.xml +++ b/sci-biology/qrna/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/raxml/metadata.xml b/sci-biology/raxml/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/raxml/metadata.xml +++ b/sci-biology/raxml/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/readseq/metadata.xml b/sci-biology/readseq/metadata.xml index b198f044f3f5..245af9a45b5c 100644 --- a/sci-biology/readseq/metadata.xml +++ b/sci-biology/readseq/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/readseq/readseq-20080420-r1.ebuild b/sci-biology/readseq/readseq-20080420-r1.ebuild index 43c538beb596..c483fc242027 100644 --- a/sci-biology/readseq/readseq-20080420-r1.ebuild +++ b/sci-biology/readseq/readseq-20080420-r1.ebuild @@ -12,7 +12,7 @@ HOMEPAGE="http://iubio.bio.indiana.edu/soft/molbio/readseq/" # Originally unversioned at # http://iubio.bio.indiana.edu/soft/molbio/readseq/java/readseq-source.zip. # Renamed to the date of the modification and mirrored -SRC_URI="http://dev.gentoo.org/~dberkholz/distfiles/${MY_P}.zip" +SRC_URI="https://dev.gentoo.org/~dberkholz/distfiles/${MY_P}.zip" LICENSE="public-domain" SLOT="0" diff --git a/sci-biology/readseq/readseq-20100513.ebuild b/sci-biology/readseq/readseq-20100513.ebuild index 6539ebd427cc..3f18380ad040 100644 --- a/sci-biology/readseq/readseq-20100513.ebuild +++ b/sci-biology/readseq/readseq-20100513.ebuild @@ -8,7 +8,7 @@ inherit java-pkg-2 java-ant-2 DESCRIPTION="Reads and writes nucleic/protein sequences in various formats" HOMEPAGE="http://iubio.bio.indiana.edu/soft/molbio/readseq/" -SRC_URI="http://dev.gentoo.org/~ercpe/distfiles/${CATEGORY}/${PN}/${P}.zip" +SRC_URI="https://dev.gentoo.org/~ercpe/distfiles/${CATEGORY}/${PN}/${P}.zip" LICENSE="public-domain" SLOT="0" diff --git a/sci-biology/rebase/metadata.xml b/sci-biology/rebase/metadata.xml index 734fcff7e215..dd0f62c9e614 100644 --- a/sci-biology/rebase/metadata.xml +++ b/sci-biology/rebase/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/rebase/rebase-1507.ebuild b/sci-biology/rebase/rebase-1507.ebuild index 6b32ba231a2e..0088b50aa25b 100644 --- a/sci-biology/rebase/rebase-1507.ebuild +++ b/sci-biology/rebase/rebase-1507.ebuild @@ -8,7 +8,7 @@ MY_PV=${PV#1} DESCRIPTION="A restriction enzyme database" HOMEPAGE="http://rebase.neb.com" -SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" SLOT="0" LICENSE="public-domain" diff --git a/sci-biology/rebase/rebase-1508.ebuild b/sci-biology/rebase/rebase-1508.ebuild index f171a569ee83..1bfa8ba6880d 100644 --- a/sci-biology/rebase/rebase-1508.ebuild +++ b/sci-biology/rebase/rebase-1508.ebuild @@ -8,7 +8,7 @@ MY_PV=${PV#1} DESCRIPTION="A restriction enzyme database" HOMEPAGE="http://rebase.neb.com" -SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" SLOT="0" LICENSE="public-domain" diff --git a/sci-biology/recon/metadata.xml b/sci-biology/recon/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/recon/metadata.xml +++ b/sci-biology/recon/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/repeatmasker-libraries/metadata.xml b/sci-biology/repeatmasker-libraries/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/repeatmasker-libraries/metadata.xml +++ b/sci-biology/repeatmasker-libraries/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/repeatmasker/metadata.xml b/sci-biology/repeatmasker/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/repeatmasker/metadata.xml +++ b/sci-biology/repeatmasker/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/rmblast/metadata.xml b/sci-biology/rmblast/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/rmblast/metadata.xml +++ b/sci-biology/rmblast/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/rnaview/metadata.xml b/sci-biology/rnaview/metadata.xml index b243b0c8da63..796cc13fdf59 100644 --- a/sci-biology/rnaview/metadata.xml +++ b/sci-biology/rnaview/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/samtools/metadata.xml b/sci-biology/samtools/metadata.xml index 74dc02bc9826..719203ab7c3a 100644 --- a/sci-biology/samtools/metadata.xml +++ b/sci-biology/samtools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/seaview/metadata.xml b/sci-biology/seaview/metadata.xml index 33794f43ab01..096ea3fa5814 100644 --- a/sci-biology/seaview/metadata.xml +++ b/sci-biology/seaview/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/seqan/metadata.xml b/sci-biology/seqan/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/seqan/metadata.xml +++ b/sci-biology/seqan/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/shrimp/metadata.xml b/sci-biology/shrimp/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/shrimp/metadata.xml +++ b/sci-biology/shrimp/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/sibsim4/metadata.xml b/sci-biology/sibsim4/metadata.xml index cfcd5be131d0..35b54f0486fd 100644 --- a/sci-biology/sibsim4/metadata.xml +++ b/sci-biology/sibsim4/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/sim4/metadata.xml b/sci-biology/sim4/metadata.xml index ea9731279003..9d3740204604 100644 --- a/sci-biology/sim4/metadata.xml +++ b/sci-biology/sim4/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/snpfile/metadata.xml b/sci-biology/snpfile/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/snpfile/metadata.xml +++ b/sci-biology/snpfile/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/stride/metadata.xml b/sci-biology/stride/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/stride/metadata.xml +++ b/sci-biology/stride/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/stride/stride-20011129-r1.ebuild b/sci-biology/stride/stride-20011129-r1.ebuild index 0848427631a0..ea01b1fa76be 100644 --- a/sci-biology/stride/stride-20011129-r1.ebuild +++ b/sci-biology/stride/stride-20011129-r1.ebuild @@ -10,7 +10,7 @@ DESCRIPTION="Protein secondary structure assignment from atomic coordinates" HOMEPAGE="http://webclu.bio.wzw.tum.de/stride/" SRC_URI=" ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}/src/${PN}.tar.gz - http://dev.gentoo.org/~jlec/distfiles/${PN}-20060723-update.patch.bz2" + https://dev.gentoo.org/~jlec/distfiles/${PN}-20060723-update.patch.bz2" SLOT="0" LICENSE="STRIDE" diff --git a/sci-biology/t-coffee/metadata.xml b/sci-biology/t-coffee/metadata.xml index 9a577185ee36..b24ed27a4145 100644 --- a/sci-biology/t-coffee/metadata.xml +++ b/sci-biology/t-coffee/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/tophat/metadata.xml b/sci-biology/tophat/metadata.xml index 36cf4a138940..a4b99d4d7527 100644 --- a/sci-biology/tophat/metadata.xml +++ b/sci-biology/tophat/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <use> diff --git a/sci-biology/transfac/metadata.xml b/sci-biology/transfac/metadata.xml index d07df4fd4dbf..96faf337489c 100644 --- a/sci-biology/transfac/metadata.xml +++ b/sci-biology/transfac/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/tree-puzzle/metadata.xml b/sci-biology/tree-puzzle/metadata.xml index cbdeede346fa..1e490902a625 100644 --- a/sci-biology/tree-puzzle/metadata.xml +++ b/sci-biology/tree-puzzle/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/treeviewx/metadata.xml b/sci-biology/treeviewx/metadata.xml index e351ff6c1fa9..f315d73937ae 100644 --- a/sci-biology/treeviewx/metadata.xml +++ b/sci-biology/treeviewx/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/trf/metadata.xml b/sci-biology/trf/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/trf/metadata.xml +++ b/sci-biology/trf/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/trnascan-se/metadata.xml b/sci-biology/trnascan-se/metadata.xml index 55de1683677f..83f4b1ae09fc 100644 --- a/sci-biology/trnascan-se/metadata.xml +++ b/sci-biology/trnascan-se/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/uchime/metadata.xml b/sci-biology/uchime/metadata.xml index a3c0f91c8a08..7c1030d54a9c 100644 --- a/sci-biology/uchime/metadata.xml +++ b/sci-biology/uchime/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/ucsc-genome-browser/metadata.xml b/sci-biology/ucsc-genome-browser/metadata.xml index f1f3ccfb77e0..2abe32d164a2 100644 --- a/sci-biology/ucsc-genome-browser/metadata.xml +++ b/sci-biology/ucsc-genome-browser/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <use> diff --git a/sci-biology/unafold/metadata.xml b/sci-biology/unafold/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/unafold/metadata.xml +++ b/sci-biology/unafold/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/update-blastdb/metadata.xml b/sci-biology/update-blastdb/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/update-blastdb/metadata.xml +++ b/sci-biology/update-blastdb/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/vaal/metadata.xml b/sci-biology/vaal/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/vaal/metadata.xml +++ b/sci-biology/vaal/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml index c45e9f4dea06..7c77cff5bcaa 100644 --- a/sci-biology/vcftools/metadata.xml +++ b/sci-biology/vcftools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/velvet/metadata.xml b/sci-biology/velvet/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/velvet/metadata.xml +++ b/sci-biology/velvet/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/vienna-rna/metadata.xml b/sci-biology/vienna-rna/metadata.xml index 50f4e02d4a18..e4155f105613 100644 --- a/sci-biology/vienna-rna/metadata.xml +++ b/sci-biology/vienna-rna/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <longdescription> diff --git a/sci-biology/wgs-assembler/metadata.xml b/sci-biology/wgs-assembler/metadata.xml index 8e4a74368071..c651ff9580c0 100644 --- a/sci-biology/wgs-assembler/metadata.xml +++ b/sci-biology/wgs-assembler/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <upstream> diff --git a/sci-biology/wise/metadata.xml b/sci-biology/wise/metadata.xml index f17a827e3101..fdb6c59d50a3 100644 --- a/sci-biology/wise/metadata.xml +++ b/sci-biology/wise/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/yass/metadata.xml b/sci-biology/yass/metadata.xml index e4a717e691b2..3756a4d4e2f4 100644 --- a/sci-biology/yass/metadata.xml +++ b/sci-biology/yass/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <use> |