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| author |   Kent Fredric <kentnl@gentoo.org> | 2017-07-18 11:55:34 +1200 |
|---|---|---|
| committer | Kent Fredric <kentnl@gentoo.org> | 2017-07-18 16:38:03 +1200 |
| commit | c16e51d89ade3ee46c780185a2aad20555ab154b (patch) | |
| tree | 85a7c8c929f00e18b055f9adcecc3b9081a65028 /sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild | |
| parent | sci-biology/bioperl-db: Fix broken test dependencies (diff) | |
| download | gentoo-c16e51d89ade3ee46c780185a2aad20555ab154b.tar.gz gentoo-c16e51d89ade3ee46c780185a2aad20555ab154b.tar.bz2 gentoo-c16e51d89ade3ee46c780185a2aad20555ab154b.zip | |
sci-biology/bioperl-db: EAPI6/-R1 Bump
- Test infa overhauled slightly
- EAPI6ified
- More test changes planned
- -r1 bump mostly for double-safety around EAPI6 changes
Package-Manager: Portage-2.3.6, Repoman-2.3.2
Diffstat (limited to 'sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild')
| -rw-r--r-- | sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild | 61 |
1 files changed, 61 insertions, 0 deletions
diff --git a/sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild b/sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild new file mode 100644 index 000000000000..fd3a4280fa03 --- /dev/null +++ b/sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild @@ -0,0 +1,61 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +BIOPERL_RELEASE=1.6.9 + +DIST_NAME=BioPerl-DB +DIST_AUTHOR=CJFIELDS +DIST_VERSION=1.006900 +inherit perl-module + +DESCRIPTION="Perl tools for bioinformatics - Perl API that accesses the BioSQL schema" +HOMEPAGE="http://www.bioperl.org/" + +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="test" + +DIST_TEST="do" # Parallelism probably bad + +RDEPEND=" + >=sci-biology/bioperl-${PV} + dev-perl/DBD-mysql + dev-perl/DBI + sci-biology/biosql" +DEPEND="${RDEPEND} + dev-perl/Module-Build + test? ( + dev-perl/Data-Stag + dev-perl/Sub-Uplevel + dev-perl/Test-Warn + dev-perl/Test-Exception + virtual/perl-Test-Simple + ) +" + +src_prepare() { + if use test; then + eapply "${FILESDIR}/${PN}-1.6.9-db.patch" + einfo "Using the following configuration details for test database:" + einfo " GENTOO_DB_TEST_HOST : ${GENTOO_DB_TEST_HOST:=localhost}" + einfo " GENTOO_DB_TEST_USER : ${GENTOO_DB_TEST_USER:=portage}" + einfo " GENTOO_DB_TEST_PORT : ${GENTOO_DB_TEST_PORT:=3306}" + einfo " GENTOO_DB_TEST_PASSWOWRD: ${GENTOO_DB_TEST_PASSWORD:=sekrit}" + einfo " GENTOO_DB_TEST_DATABASE : ${GENTOO_DB_TEST_DB:=biosql_test}" + einfo "Please ensure the relevant mysql database is configured and/or tweak" + einfo "environment variables to suit" + export GENTOO_DB_TEST_HOST GENTOO_DB_TEST_USER GENTOO_DB_TEST_PORT GENTOO_DB_TEST_PASSWORD GENTOO_DB_TEST_DB + fi + perl-module_src_prepare +} +src_install() { + mydoc="AUTHORS BUGS FAQ" + perl-module_src_install +} +src_test() { + einfo "Removing bundled test libraries t/lib" + rm -r "${S}/t/lib" || die "Cannot remove t/lib" + perl-module_src_test +} |