1 files changed, 116 insertions, 0 deletions
diff --git a/sci-chemistry/ccp4-apps/files/6.1.3-impl-dec.patch b/sci-chemistry/ccp4-apps/files/6.1.3-impl-dec.patch
index 7529ea5de593..db8236063043 100644
--- a/sci-chemistry/ccp4-apps/files/6.1.3-impl-dec.patch
+++ b/sci-chemistry/ccp4-apps/files/6.1.3-impl-dec.patch
@@ -1,3 +1,107 @@
+diff --git a/lib/DiffractionImage/Bruker/FRM_LIB.c b/lib/DiffractionImage/Bruker/FRM_LIB.c
+index bfda882..f821e04 100755
+--- a/lib/DiffractionImage/Bruker/FRM_LIB.c
++++ b/lib/DiffractionImage/Bruker/FRM_LIB.c
+@@ -38,6 +38,8 @@ FRM_LIB: Routines for reading, writing, and handling frame files.
+ #include "sys/types.h"  /* _open, etc. */
+ #include "sys/stat.h"   /* _open, etc. */
+ 
++#include <unistd.h>
++
+ #ifndef _MSC_VER
+ int min(int a, int b)
+ 	{
+diff --git a/lib/DiffractionImage/MAR/mar300_header.c b/lib/DiffractionImage/MAR/mar300_header.c
+index 1a933de..1c40c32 100755
+--- a/lib/DiffractionImage/MAR/mar300_header.c
++++ b/lib/DiffractionImage/MAR/mar300_header.c
+@@ -23,6 +23,9 @@
+  */
+ #include "mar300_header.h"
+ 
++#include <sys/types.h>
++#include <unistd.h>
++
+ /*
+  * Local functions
+  */
+diff --git a/lib/DiffractionImage/MAR/mar345_header.c b/lib/DiffractionImage/MAR/mar345_header.c
+index a8351ea..16d0f7b 100755
+--- a/lib/DiffractionImage/MAR/mar345_header.c
++++ b/lib/DiffractionImage/MAR/mar345_header.c
+@@ -32,6 +32,9 @@
+  */
+ #include "mar345_header.h"
+ 
++#include <sys/types.h>
++#include <unistd.h>
++
+ /*
+  * Definitions
+  */
+diff --git a/lib/DiffractionImage/MAR/nb_header.c b/lib/DiffractionImage/MAR/nb_header.c
+index 07f2741..6364ca4 100755
+--- a/lib/DiffractionImage/MAR/nb_header.c
++++ b/lib/DiffractionImage/MAR/nb_header.c
+@@ -20,6 +20,8 @@
+ #include <io.h>
+ #endif
+ 
++#include <sys/types.h>
++#include <unistd.h>
+ /*
+  * mar software include files
+  */
+diff --git a/lib/DiffractionImage/MAR/swap.c b/lib/DiffractionImage/MAR/swap.c
+index 443bb8c..0d96b3f 100755
+--- a/lib/DiffractionImage/MAR/swap.c
++++ b/lib/DiffractionImage/MAR/swap.c
+@@ -10,6 +10,9 @@
+  *
+  **********************************************************************/
+ 
++#define _XOPEN_SOURCE
++#include <unistd.h>
++
+ void swaplong();
+ void swapshort();
+ 
+diff --git a/lib/ccif/f_interface.c b/lib/ccif/f_interface.c
+index 0f6a6b7..a09dc48 100755
+--- a/lib/ccif/f_interface.c
++++ b/lib/ccif/f_interface.c
+@@ -25,6 +25,7 @@
+ ********************************************************************/
+ 
+ #include "stdpccts.h"
++#include <sys/mman.h>
+ 
+ /* This file is terribly organised, and badly needs re-doing. There is probably
+  * scope for splitting this into three modules:
+diff --git a/lib/src/ccp4_general_f.c b/lib/src/ccp4_general_f.c
+index 8b5d04f..74ee3f7 100755
+--- a/lib/src/ccp4_general_f.c
++++ b/lib/src/ccp4_general_f.c
+@@ -26,6 +26,7 @@
+ #include <string.h>
+ #include <stdlib.h>
+ #include <math.h>
++#include <time.h>
+ #include "ccp4_errno.h"
+ #include "ccp4_fortran.h"
+ #include "ccp4_parser.h"
+diff --git a/lib/src/ccp4_program.c b/lib/src/ccp4_program.c
+index 3e83d4d..bb3e975 100755
+--- a/lib/src/ccp4_program.c
++++ b/lib/src/ccp4_program.c
+@@ -25,6 +25,7 @@
+ #include <stdio.h>
+ #include <stdlib.h>
+ #include <string.h>
++#include <time.h>
+ #include "ccp4_program.h"
+ #include "ccp4_parser.h"
+ #include "ccp4_utils.h"
 diff --git a/lib/src/fsplit.c b/lib/src/fsplit.c
 index ee8af24..c6fb3cd 100755
 --- a/lib/src/fsplit.c
@@ -34,3 +138,15 @@ index e224430..c7b82f4 100755
  #include "csymlib.h"
  #include "mtz2cif_lib.h"
  
+diff --git a/x-windows/XCCPJIFFY/xplot84driver.c b/x-windows/XCCPJIFFY/xplot84driver.c
+index 67e0bf1..76526ab 100755
+--- a/x-windows/XCCPJIFFY/xplot84driver.c
++++ b/x-windows/XCCPJIFFY/xplot84driver.c
+@@ -11,6 +11,7 @@
+ 
+ #include <stdio.h>
+ #include <sys/types.h>
++#include <stdlib.h>
+ 
+ #include <X11/StringDefs.h>
+ #include <X11/Intrinsic.h>