Moved from sci overlay to tree

Package-Manager: portage-2.2_rc67/cvs/Linux x86_64

3 files changed, 363 insertions, 0 deletions

diff --git a/sci-libs/superlu/files/4.0-test.patch b/sci-libs/superlu/files/4.0-test.patch
new file mode 100644
index 000000000000..c697acfd892e
--- /dev/null
+++ b/sci-libs/superlu/files/4.0-test.patch
@@ -0,0 +1,52 @@
+diff --git a/TESTING/cdrive.c b/TESTING/cdrive.c
+index 0ff08e1..6c5cd36 100644
+--- a/TESTING/cdrive.c
++++ b/TESTING/cdrive.c
+@@ -78,7 +78,7 @@ main(int argc, char *argv[])
+     trans_t        trans;
+     SuperLUStat_t  stat;
+     static char    matrix_type[8];
+-    static char    equed[1], path[3], sym[1], dist[1];
++    static char    equed[1], path[4], sym[1], dist[1];
+ 
+     /* Fixed set of parameters */
+     int            iseed[]  = {1988, 1989, 1990, 1991};
+diff --git a/TESTING/ddrive.c b/TESTING/ddrive.c
+index 587dd59..d2b12f3 100644
+--- a/TESTING/ddrive.c
++++ b/TESTING/ddrive.c
+@@ -78,7 +78,7 @@ main(int argc, char *argv[])
+     trans_t        trans;
+     SuperLUStat_t  stat;
+     static char    matrix_type[8];
+-    static char    equed[1], path[3], sym[1], dist[1];
++    static char    equed[1], path[4], sym[1], dist[1];
+ 
+     /* Fixed set of parameters */
+     int            iseed[]  = {1988, 1989, 1990, 1991};
+diff --git a/TESTING/sdrive.c b/TESTING/sdrive.c
+index b209ae6..d44ff4b 100644
+--- a/TESTING/sdrive.c
++++ b/TESTING/sdrive.c
+@@ -78,7 +78,7 @@ main(int argc, char *argv[])
+     trans_t        trans;
+     SuperLUStat_t  stat;
+     static char    matrix_type[8];
+-    static char    equed[1], path[3], sym[1], dist[1];
++    static char    equed[1], path[4], sym[1], dist[1];
+ 
+     /* Fixed set of parameters */
+     int            iseed[]  = {1988, 1989, 1990, 1991};
+diff --git a/TESTING/zdrive.c b/TESTING/zdrive.c
+index 5844f6a..33bd22e 100644
+--- a/TESTING/zdrive.c
++++ b/TESTING/zdrive.c
+@@ -78,7 +78,7 @@ main(int argc, char *argv[])
+     trans_t        trans;
+     SuperLUStat_t  stat;
+     static char    matrix_type[8];
+-    static char    equed[1], path[3], sym[1], dist[1];
++    static char    equed[1], path[4], sym[1], dist[1];
+ 
+     /* Fixed set of parameters */
+     int            iseed[]  = {1988, 1989, 1990, 1991};
diff --git a/sci-libs/superlu/files/superlu-4.0-autotools.patch b/sci-libs/superlu/files/superlu-4.0-autotools.patch
new file mode 100644
index 000000000000..5e14f263d3b5
--- /dev/null
+++ b/sci-libs/superlu/files/superlu-4.0-autotools.patch
@@ -0,0 +1,298 @@
+--- configure.ac 	1970-01-01 01:00:00.000000000 +0100
++++ configure.ac	2008-02-01 10:58:41.238020847 +0000
+@@ -0,0 +1,14 @@
++# -*- Autoconf -*-
++AC_PREREQ(2.59)
++AC_INIT(superlu, 3.0, xsli@lbl.gov)
++AM_INIT_AUTOMAKE([foreign])
++AC_CONFIG_HEADER([config.h])
++AC_PROG_INSTALL
++AC_PROG_LIBTOOL
++sinclude(acx_blas.m4)
++ACX_BLAS
++if test x"$BLAS_LIBS" = x; then
++   AC_MSG_ERROR([Cannot find blas libraries])
++fi
++AC_CONFIG_FILES([Makefile SRC/Makefile])
++AC_OUTPUT
+--- acx_blas.m4 	1970-01-01 01:00:00.000000000 +0100
++++ acx_blas.m4	2008-02-01 10:58:19.428778009 +0000
+@@ -0,0 +1,191 @@
++##### http://autoconf-archive.cryp.to/acx_blas.html
++#
++# SYNOPSIS
++#
++#   ACX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
++#
++# DESCRIPTION
++#
++#   This macro looks for a library that implements the BLAS
++#   linear-algebra interface (see http://www.netlib.org/blas/). On
++#   success, it sets the BLAS_LIBS output variable to hold the
++#   requisite library linkages.
++#
++#   To link with BLAS, you should link with:
++#
++#   	$BLAS_LIBS $LIBS $FLIBS
++#
++#   in that order. FLIBS is the output variable of the
++#   AC_F77_LIBRARY_LDFLAGS macro (called if necessary by ACX_BLAS), and
++#   is sometimes necessary in order to link with F77 libraries. Users
++#   will also need to use AC_F77_DUMMY_MAIN (see the autoconf manual),
++#   for the same reason.
++#
++#   Many libraries are searched for, from ATLAS to CXML to ESSL. The
++#   user may also use --with-blas=<lib> in order to use some specific
++#   BLAS library <lib>. In order to link successfully, however, be
++#   aware that you will probably need to use the same Fortran compiler
++#   (which can be set via the F77 env. var.) as was used to compile the
++#   BLAS library.
++#
++#   ACTION-IF-FOUND is a list of shell commands to run if a BLAS
++#   library is found, and ACTION-IF-NOT-FOUND is a list of commands to
++#   run it if it is not found. If ACTION-IF-FOUND is not specified, the
++#   default action will define HAVE_BLAS.
++#
++#   This macro requires autoconf 2.50 or later.
++#
++# LAST MODIFICATION
++#
++#   2007-07-29
++#
++# COPYLEFT
++#
++#   Copyright (c) 2007 Steven G. Johnson <stevenj@alum.mit.edu>
++#
++#   This program is free software: you can redistribute it and/or
++#   modify it under the terms of the GNU General Public License as
++#   published by the Free Software Foundation, either version 3 of the
++#   License, or (at your option) any later version.
++#
++#   This program is distributed in the hope that it will be useful, but
++#   WITHOUT ANY WARRANTY; without even the implied warranty of
++#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
++#   General Public License for more details.
++#
++#   You should have received a copy of the GNU General Public License
++#   along with this program. If not, see
++#   <http://www.gnu.org/licenses/>.
++#
++#   As a special exception, the respective Autoconf Macro's copyright
++#   owner gives unlimited permission to copy, distribute and modify the
++#   configure scripts that are the output of Autoconf when processing
++#   the Macro. You need not follow the terms of the GNU General Public
++#   License when using or distributing such scripts, even though
++#   portions of the text of the Macro appear in them. The GNU General
++#   Public License (GPL) does govern all other use of the material that
++#   constitutes the Autoconf Macro.
++#
++#   This special exception to the GPL applies to versions of the
++#   Autoconf Macro released by the Autoconf Macro Archive. When you
++#   make and distribute a modified version of the Autoconf Macro, you
++#   may extend this special exception to the GPL to apply to your
++#   modified version as well.
++
++AC_DEFUN([ACX_BLAS], [
++AC_PREREQ(2.50)
++AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS])
++acx_blas_ok=no
++
++AC_ARG_WITH(blas,
++	[AC_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])])
++case $with_blas in
++	yes | "") ;;
++	no) acx_blas_ok=disable ;;
++	-* | */* | *.a | *.so | *.so.* | *.o) BLAS_LIBS="$with_blas" ;;
++	*) BLAS_LIBS="-l$with_blas" ;;
++esac
++
++# Get fortran linker names of BLAS functions to check for.
++AC_F77_FUNC(sgemm)
++AC_F77_FUNC(dgemm)
++
++acx_blas_save_LIBS="$LIBS"
++LIBS="$LIBS $FLIBS"
++
++# First, check BLAS_LIBS environment variable
++if test $acx_blas_ok = no; then
++if test "x$BLAS_LIBS" != x; then
++	save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
++	AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS])
++	AC_TRY_LINK_FUNC($sgemm, [acx_blas_ok=yes], [BLAS_LIBS=""])
++	AC_MSG_RESULT($acx_blas_ok)
++	LIBS="$save_LIBS"
++fi
++fi
++
++# BLAS linked to by default?  (happens on some supercomputers)
++if test $acx_blas_ok = no; then
++	save_LIBS="$LIBS"; LIBS="$LIBS"
++	AC_CHECK_FUNC($sgemm, [acx_blas_ok=yes])
++	LIBS="$save_LIBS"
++fi
++
++# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
++if test $acx_blas_ok = no; then
++	AC_CHECK_LIB(atlas, ATL_xerbla,
++		[AC_CHECK_LIB(f77blas, $sgemm,
++		[AC_CHECK_LIB(cblas, cblas_dgemm,
++			[acx_blas_ok=yes
++			 BLAS_LIBS="-lcblas -lf77blas -latlas"],
++			[], [-lf77blas -latlas])],
++			[], [-latlas])])
++fi
++
++# BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
++if test $acx_blas_ok = no; then
++	AC_CHECK_LIB(blas, $sgemm,
++		[AC_CHECK_LIB(dgemm, $dgemm,
++		[AC_CHECK_LIB(sgemm, $sgemm,
++			[acx_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"],
++			[], [-lblas])],
++			[], [-lblas])])
++fi
++
++# BLAS in Alpha CXML library?
++if test $acx_blas_ok = no; then
++	AC_CHECK_LIB(cxml, $sgemm, [acx_blas_ok=yes;BLAS_LIBS="-lcxml"])
++fi
++
++# BLAS in Alpha DXML library? (now called CXML, see above)
++if test $acx_blas_ok = no; then
++	AC_CHECK_LIB(dxml, $sgemm, [acx_blas_ok=yes;BLAS_LIBS="-ldxml"])
++fi
++
++# BLAS in Sun Performance library?
++if test $acx_blas_ok = no; then
++	if test "x$GCC" != xyes; then # only works with Sun CC
++		AC_CHECK_LIB(sunmath, acosp,
++			[AC_CHECK_LIB(sunperf, $sgemm,
++        			[BLAS_LIBS="-xlic_lib=sunperf -lsunmath"
++                                 acx_blas_ok=yes],[],[-lsunmath])])
++	fi
++fi
++
++# BLAS in SCSL library?  (SGI/Cray Scientific Library)
++if test $acx_blas_ok = no; then
++	AC_CHECK_LIB(scs, $sgemm, [acx_blas_ok=yes; BLAS_LIBS="-lscs"])
++fi
++
++# BLAS in SGIMATH library?
++if test $acx_blas_ok = no; then
++	AC_CHECK_LIB(complib.sgimath, $sgemm,
++		     [acx_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"])
++fi
++
++# BLAS in IBM ESSL library? (requires generic BLAS lib, too)
++if test $acx_blas_ok = no; then
++	AC_CHECK_LIB(blas, $sgemm,
++		[AC_CHECK_LIB(essl, $sgemm,
++			[acx_blas_ok=yes; BLAS_LIBS="-lessl -lblas"],
++			[], [-lblas $FLIBS])])
++fi
++
++# Generic BLAS library?
++if test $acx_blas_ok = no; then
++	AC_CHECK_LIB(blas, $sgemm, [acx_blas_ok=yes; BLAS_LIBS="-lblas"])
++fi
++
++AC_SUBST(BLAS_LIBS)
++
++LIBS="$acx_blas_save_LIBS"
++
++# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
++if test x"$acx_blas_ok" = xyes; then
++        ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1])
++        :
++else
++        acx_blas_ok=no
++        $2
++fi
++])dnl ACX_BLAS
+--- Makefile.am 	1970-01-01 01:00:00.000000000 +0100
++++ Makefile.am	2008-02-01 10:58:19.428778009 +0000
+@@ -0,0 +1 @@
++SUBDIRS = SRC
+--- SRC/Makefile.am 	1970-01-01 01:00:00.000000000 +0100
++++ SRC/Makefile.am	2008-02-01 10:58:19.428778009 +0000
+@@ -0,0 +1,80 @@
++AM_CPPFLAGS = -DAdd_
++### LAPACK 
++LAAUX 	= lsame.c xerbla.c
++SLASRC 	= slacon.c 
++DLASRC	= dlacon.c
++CLASRC	= clacon.c scsum1.c icmax1.c
++ZLASRC	= zlacon.c dzsum1.c izmax1.c
++SCLAUX 	= slamch.c
++DZLAUX 	= dlamch.c
++
++### SuperLU 
++ALLAUX 	= superlu_timer.c util.c memory.c get_perm_c.c mmd.c \
++	  sp_coletree.c sp_preorder.c sp_ienv.c relax_snode.c \
++	  heap_relax_snode.c colamd.c
++
++SLUSRC = \
++	sgssv.c sgssvx.c \
++	ssp_blas2.c ssp_blas3.c sgscon.c  \
++	slangs.c sgsequ.c slaqgs.c spivotgrowth.c \
++	sgsrfs.c sgstrf.c sgstrs.c scopy_to_ucol.c \
++	ssnode_dfs.c ssnode_bmod.c \
++	spanel_dfs.c spanel_bmod.c sreadhb.c \
++	scolumn_dfs.c scolumn_bmod.c spivotL.c spruneL.c \
++	smemory.c sutil.c smyblas2.c
++
++DLUSRC = \
++	dgssv.c dgssvx.c \
++	dsp_blas2.c dsp_blas3.c dgscon.c \
++	dlangs.c dgsequ.c dlaqgs.c dpivotgrowth.c  \
++	dgsrfs.c dgstrf.c dgstrs.c dcopy_to_ucol.c \
++	dsnode_dfs.c dsnode_bmod.c \
++	dpanel_dfs.c dpanel_bmod.c dreadhb.c \
++	dcolumn_dfs.c dcolumn_bmod.c dpivotL.c dpruneL.c \
++	dmemory.c dutil.c dmyblas2.c
++
++CLUSRC = \
++	scomplex.c cgssv.c cgssvx.c csp_blas2.c csp_blas3.c cgscon.c \
++	clangs.c cgsequ.c claqgs.c cpivotgrowth.c  \
++	cgsrfs.c cgstrf.c cgstrs.c ccopy_to_ucol.c \
++	csnode_dfs.c csnode_bmod.c \
++	cpanel_dfs.c cpanel_bmod.c creadhb.c \
++	ccolumn_dfs.c ccolumn_bmod.c cpivotL.c cpruneL.c \
++	cmemory.c cutil.c cmyblas2.c
++
++ZLUSRC = \
++	dcomplex.c zgssv.c zgssvx.c zsp_blas2.c zsp_blas3.c zgscon.c \
++	zlangs.c zgsequ.c zlaqgs.c zpivotgrowth.c  \
++	zgsrfs.c zgstrf.c zgstrs.c zcopy_to_ucol.c \
++	zsnode_dfs.c zsnode_bmod.c \
++	zpanel_dfs.c zpanel_bmod.c zreadhb.c \
++	zcolumn_dfs.c zcolumn_bmod.c zpivotL.c zpruneL.c \
++	zmemory.c zutil.c zmyblas2.c
++
++lib_LTLIBRARIES = libsuperlu.la
++libsuperlu_la_SOURCES = \
++	$(ALLAUX) $(LAAUX) \
++	$(SCLAUX) $(DZLAUX) \
++	$(SLUSRC) $(SLASRC) \
++	$(DLUSRC) $(DLASRC) \
++	$(CLUSRC) $(CLASRC) \
++	$(ZLUSRC) $(ZLASRC)
++libsuperlu_la_LIBADD = $(BLAS_LIBS)
++libsuperlu_la_LDFLAGS = -no-undefined -version-info 3:0:0
++
++
++
++##################################
++# Do not optimize these routines #
++##################################
++LTCOMPILE_NOOPT = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
++	--mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
++	$(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS)
++
++slamch.lo: slamch.c
++	$(LTCOMPILE_NOOPT) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
++dlamch.lo: dlamch.c
++	$(LTCOMPILE_NOOPT) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
++superlu_timer.lo: superlu_timer.c
++	$(LTCOMPILE_NOOPT) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
++##################################
diff --git a/sci-libs/superlu/files/superlu-examples.patch b/sci-libs/superlu/files/superlu-examples.patch
new file mode 100644
index 000000000000..a585c1a01b71
--- /dev/null
+++ b/sci-libs/superlu/files/superlu-examples.patch
@@ -0,0 +1,13 @@
+--- EXAMPLE/Makefile.orig	2008-01-31 17:16:16.008471873 +0000
++++ EXAMPLE/Makefile	2008-01-31 17:20:16.581889615 +0000
+@@ -19,4 +19,9 @@
+-include ../make.inc
++SUPERLULIB   = -lsuperlu
++BLASLIB      = $(BLAS_LIBS)
++FORTRAN	     = $(F77)
++LOADER       = $(LD)
++LOADOPTS     = $(LDFLAGS)
++CDEFS        = -DAdd_
+ 
+ #######################################################################
+ #  This makefile creates the example programs for the linear equation