Version Bump

Package-Manager: portage-2.2_rc67/cvs/Linux x86_64

3 files changed, 82 insertions, 5 deletions

diff --git a/sci-chemistry/refmac/ChangeLog b/sci-chemistry/refmac/ChangeLog
index d6716faaab6d..5c76829dac0f 100644
--- a/sci-chemistry/refmac/ChangeLog
+++ b/sci-chemistry/refmac/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-chemistry/refmac
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.6 2010/05/16 12:56:16 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.7 2010/05/18 16:17:56 jlec Exp $
+
+*refmac-5.6.0076 (18 May 2010)
+
+  18 May 2010; Justin Lecher <jlec@gentoo.org> +refmac-5.6.0076.ebuild:
+  Version Bump
 
 *refmac-5.6.0075 (16 May 2010)
 
diff --git a/sci-chemistry/refmac/Manifest b/sci-chemistry/refmac/Manifest
index e344143acd4c..a1dcb0f25e6b 100644
--- a/sci-chemistry/refmac/Manifest
+++ b/sci-chemistry/refmac/Manifest
@@ -6,18 +6,20 @@ AUX 5.5-test.log.patch 1146 RMD160 0ea6293e8ecde3b9ae12658a523e3c30a5c9f01b SHA1
 AUX 5.5.0110-allow-dynamic-linking.patch 2265 RMD160 191b90c619a3a0a6cd71b819b4517d639f9912e0 SHA1 23df6c19a6fa9a41ed19d4ec36bd3130ffdb40b7 SHA256 ed10babfa6f9521b1b8e0dd574aa5fa4207d64bcd57332e97f0b35039b66942b
 AUX 5.6.0075-allow-dynamic-linking.patch 1447 RMD160 5b4eca9f5e03aa0dea24fe4e391c363b3600eb4a SHA1 a3e4989d6b68c77e69e1bfcb76ddbc98c6e7a157 SHA256 0e54d70ac56326422158d19268432772813d34b653b041554ac6e08981ff0140
 DIST refmac5.6_source_v5.6.0075.tar.gz 1281356 RMD160 49038a6cd690dd29dd0ba384c440c6c3ec8b03d8 SHA1 414213322b7c8fb4c04bf64ab6b60d9a8a11359b SHA256 2c0b87c9994a852b21d700a9a732f0fe389a3b448354ad59cabd65a5b855761d
+DIST refmac5.6_source_v5.6.0076.tar.gz 1281294 RMD160 f177c6b8589028e85ee0855a1f9977d3296f18c5 SHA1 e070bbc629614f208a45f49f29762b077dfcd750 SHA256 bb5bb247a1603c4c97b4a2efa6e62ca13d03acedaac19ba975c24bed17363d2f
 DIST refmac_5.5.0109.tar.gz 1326779 RMD160 3b603c13638407cceb907bd43ac0a971b587c116 SHA1 3cc35a55df71bac4de3eec9cf0e690e221ae3c86 SHA256 38d416c94e1f86a0676d48d7ddaeb4af272970b8cd6b084e70aa38481327c59e
 DIST refmac_5.5.0110.tar.gz 1326832 RMD160 6613ca8b70e54e7827f8ff02b7d497560cb83e39 SHA1 ba2e38db6c88550bd901b474de881d6514b4d74e SHA256 1353fb1042586ec8fa37d0a90f274890d0ccc02377af5216200662338dfe08ca
 DIST test-framework.tar.gz 130933173 RMD160 7122539dc713615dca2ddaddfd8d152cd22624d0 SHA1 1d3e3019a67afb9b2346e919c859d402d3250fea SHA256 df050a2a29da80518cb0616a0bbeb82298ea0721549348d15353bf0f66240605
 EBUILD refmac-5.5.0109.ebuild 1736 RMD160 4db9926be6b3cb3d17e7e1dd1bbf56d2bf34271a SHA1 daf39f7a3d57471dbaf2c217ca49fb38a36dd911 SHA256 26ce3f5cdddae57f5f6b35ed835cb826f8f3d4de3f645abec040754cc92fff9e
 EBUILD refmac-5.5.0110.ebuild 1781 RMD160 664874944ea21da9c3cb315a4f0114e3c32d4741 SHA1 5a1d4e8001f03782b8c1e43bd717a884f63ffd89 SHA256 9e54db2886755e77ea6950b63fbd4d11ff090df19f6e741f78c1ccee32188f4c
 EBUILD refmac-5.6.0075.ebuild 1762 RMD160 b70ef1ca2c46193d10ac68444f0676b9ef8b6a3c SHA1 0e8f3d81020eb0b881f536143e09be4216b36e11 SHA256 a708d37aab6d4929db50bfc56e4c968a67322449193053eeb96b5257685e4cb8
-MISC ChangeLog 1025 RMD160 207b1fd7e145c1f8b31aee44405687cc42ff9cc2 SHA1 1f06bd6223fe578e192123cd525c8b78bcb69792 SHA256 a2920fd0b35c79fe196d4366fa3a1513eef7b7eadd6fb409709c49f432c2a24c
+EBUILD refmac-5.6.0076.ebuild 1765 RMD160 f3974d98bcb4ccf2254dd5b65aa816a6a88a24e1 SHA1 b40a1023fbc24690d81d06c0de0d8934bb580625 SHA256 d4ea7d50118030cb08c530740e27a158c2914635d16e402d4c70ad1d4a97e0b1
+MISC ChangeLog 1145 RMD160 4c2a4ce05acb14adc48bf2d20ce083cc3ed1cbc2 SHA1 519b578d3b417fe667ad5582ddaf15fe25d3f9be SHA256 877557d3c4b62145ef64883ec325b1b7a4af3d8e7aad51aa75071e837d098a18
 MISC metadata.xml 311 RMD160 df83b13d491a71b729455b664088d89ddbde1c8c SHA1 fffd2a5645181aa12ac9b6f74da9a011cdcf1b97 SHA256 782521c7e16d7eec82d7b7e7c43102806e7f72bc7366401808b1e1ac6e26045a
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0.14 (GNU/Linux)
 
-iEYEARECAAYFAkvv63UACgkQgAnW8HDreRaNegCgx6lqD8/X+MFiyWcte4696UDE
-MhwAnjXF6v4WlPOtMwKoGeiQrqmYxAf/
-=AbO8
+iEYEARECAAYFAkvyvboACgkQgAnW8HDreRaYwwCeIPgY1wY+BvPRhANzAFr1SP/Y
+UWwAoIJ5H0UuePP6VueX5MMtGZ0/WlC1
+=1fBa
 -----END PGP SIGNATURE-----
diff --git a/sci-chemistry/refmac/refmac-5.6.0076.ebuild b/sci-chemistry/refmac/refmac-5.6.0076.ebuild
new file mode 100644
index 000000000000..64299d5cc3f6
--- /dev/null
+++ b/sci-chemistry/refmac/refmac-5.6.0076.ebuild
@@ -0,0 +1,70 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0076.ebuild,v 1.1 2010/05/18 16:17:56 jlec Exp $
+
+EAPI="2"
+
+inherit fortran base toolchain-funcs versionator
+
+MY_PV="$(get_version_component_range 1-2)_source_v${PV}"
+
+DESCRIPTION="Macromolecular crystallographic refinement program"
+HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac/"
+SRC_URI="${HOMEPAGE}data/refmac_experimental/${PN}${MY_PV}.tar.gz
+	test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )"
+
+SLOT="0"
+LICENSE="ccp4"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="test"
+
+RDEPEND="
+	sci-libs/ccp4-libs
+	sci-libs/mmdb
+	virtual/blas
+	virtual/lapack"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"
+
+PATCHES=(
+	"${FILESDIR}"/5.6.0075-allow-dynamic-linking.patch
+	)
+
+src_prepare() {
+	base_src_prepare
+	use test && epatch "${FILESDIR}"/5.5-test.log.patch
+}
+
+src_compile() {
+	emake \
+		FC=$(tc-getFC) \
+		CC=$(tc-getCC) \
+		CXX=$(tc-getCXX) \
+		COPTIM="${CFLAGS}" \
+		FOPTIM="${FFLAGS:- -O2}" \
+		VERSION="" \
+		XFFLAGS="-fno-second-underscore" \
+		LLIBCCP="-lccp4f -lccp4c -lccif -lmmdb -lstdc++" \
+		LLIBLAPACK="$(pkg-config --libs lapack blas)" \
+		|| die
+}
+
+src_test() {
+	einfo "Starting tests ..."
+	export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}"
+	export CCP4_TEST="${WORKDIR}"/test-framework
+	export CCP4_SCR="${T}"
+	ln -sf refmac "${S}"/refmac5
+	sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb
+	ccp4-run-thorough-tests -v test_refmac5 || die
+}
+
+src_install() {
+	for i in refmac libcheck; do
+		exeinto /usr/libexec/ccp4/bin/
+		doexe ${i} || die
+		dosym ../libexec/ccp4/bin/${i} /usr/bin/${i}
+	done
+	dosym refmac /usr/bin/refmac5 || die
+}