diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-05-02 06:08:27 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-05-02 06:08:27 +0000 |
| commit | e54103ade975ae0153c74bbc8f7ef41aaf17062a (patch) | |
| tree | 9c8baf351e9fc8ef9643d23853b33a9519394a39 /sci-biology | |
| parent | 02 May 2009; Zac Medico <zmedico@gentoo.org> -android-sdk-1.5_p1.ebuild, (diff) | |
| download | historical-e54103ade975ae0153c74bbc8f7ef41aaf17062a.tar.gz historical-e54103ade975ae0153c74bbc8f7ef41aaf17062a.tar.bz2 historical-e54103ade975ae0153c74bbc8f7ef41aaf17062a.zip | |
Version bump (pre-release)
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/hmmer/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/hmmer/Manifest | 14 | ||||
| -rw-r--r-- | sci-biology/hmmer/hmmer-3.0_alpha2.ebuild | 38 |
3 files changed, 48 insertions, 13 deletions
diff --git a/sci-biology/hmmer/ChangeLog b/sci-biology/hmmer/ChangeLog index b308da9cd741..a0aafa690784 100644 --- a/sci-biology/hmmer/ChangeLog +++ b/sci-biology/hmmer/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/hmmer -# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.23 2008/08/06 14:58:18 ulm Exp $ +# Copyright 2000-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.24 2009/05/02 06:08:27 weaver Exp $ + +*hmmer-3.0_alpha2 (02 May 2009) + + 02 May 2009; Andrey Kislyuk <weaver@gentoo.org> +hmmer-3.0_alpha2.ebuild: + Version bump (pre-release) 06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml: Add USE flag description to metadata wrt GLEP 56. diff --git a/sci-biology/hmmer/Manifest b/sci-biology/hmmer/Manifest index 687243f1bc35..7bb7479e6dcb 100644 --- a/sci-biology/hmmer/Manifest +++ b/sci-biology/hmmer/Manifest @@ -1,15 +1,7 @@ ------BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 - DIST hmmer-2.3.2.tar.gz 1024933 RMD160 4bf25fc71f332849c76b0a05bca24e88241cee67 SHA1 aa34cb97cbc43ff3bd92dd111ba5677298fe2d40 SHA256 d20e1779fcdff34ab4e986ea74a6c4ac5c5f01da2993b14e92c94d2f076828b4 +DIST hmmer-3.0a2.tar.gz 24280323 RMD160 f62316a7b9c1b3f4e8c8f7ac123a14ed027dcc86 SHA1 498dbb22f4a1cf257aa2eb238c85cd8701e6622d SHA256 335c04bf4d8523b0228afc33d331654c451e09233a23f1ae0a441047261410e4 EBUILD hmmer-2.3.2-r1.ebuild 1158 RMD160 b7e130b6b8ea46f1c2b8ecc4073820ef5ee429e9 SHA1 9da503dfe5df93dabe896d4911e0a180c824dba9 SHA256 7b1c363372b53e63da3ee7edb04bec7b8dee6606bf936205b32aaca780215bac EBUILD hmmer-2.3.2-r2.ebuild 1158 RMD160 12e1bc9bbef0d97b86bf4cabf40803ca28add539 SHA1 fdb710ae9b4f534342bc9798ba6334434e29bb7f SHA256 e637aada0386e9de663ae00dbe0af1a60c68d197c096d2f8a8b9991556e548da -MISC ChangeLog 3668 RMD160 3be27d1210724ac92953554b63aa69a3da014b36 SHA1 9c29e5dc235e2ff3a963e49e43b38244d2674931 SHA256 2bce882095beb760e46ef26dec1610af49707ab94b517f694a5d58065ee70650 +EBUILD hmmer-3.0_alpha2.ebuild 934 RMD160 63ff3d6ee88f49486127eb3242f91ad98e7a8f92 SHA1 8efd13cbca4ec00caefd0c5100dfad5a29137abd SHA256 9cc2cb1d187f4e1aee46080c5dfc7db0102d8c7296ce80b9391503990c4ccc3d +MISC ChangeLog 3810 RMD160 a6e56cc7b22f48d47dbc42e1ce8c25013069365d SHA1 a9e84d43720cc509d35c480a6628ce7637864451 SHA256 efd99d2e395eb671dd2b8be16feef0782c7f10f45c4396013799a84419a8c6ac MISC metadata.xml 277 RMD160 a018c1e9848781266ea1b6f0f6637de4f4883ca4 SHA1 62f5832f9fbeed814bae04f46e6a4815ce8e27fa SHA256 1faaa440fc96892d78af96f5450e6931f482410380abcbb5d608138c29799eb4 ------BEGIN PGP SIGNATURE----- -Version: GnuPG v1.4.9 (GNU/Linux) - -iEYEARECAAYFAkiZvBsACgkQOeoy/oIi7uxFuQCfZ0t1hYE4Cy/XzNIV8jDBBf7g -DuYAn0nwqQOTYLxMQU4S4EZQSLQVrRbG -=G1ZN ------END PGP SIGNATURE----- diff --git a/sci-biology/hmmer/hmmer-3.0_alpha2.ebuild b/sci-biology/hmmer/hmmer-3.0_alpha2.ebuild new file mode 100644 index 000000000000..71bc940be6b8 --- /dev/null +++ b/sci-biology/hmmer/hmmer-3.0_alpha2.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-3.0_alpha2.ebuild,v 1.1 2009/05/02 06:08:27 weaver Exp $ + +EAPI="2" + +MY_P="hmmer-3.0a2" + +DESCRIPTION="Sequence analysis using profile hidden Markov models" +HOMEPAGE="http://hmmer.janelia.org/" +SRC_URI="ftp://selab.janelia.org/pub/software/hmmer3/${MY_P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +IUSE="sse mpi threads" # gsl +KEYWORDS="~amd64 ~x86" + +# gsl? ( sci-libs/gsl ) +DEPEND="mpi? ( virtual/mpi )" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${MY_P}" + +src_configure() { + econf $(use_enable sse) \ + $(use_enable mpi) \ + $(use_enable threads) || die +# $(use_with gsl) || die +} + +src_install() { + emake DESTDIR="${D}" install || die + dolib src/libhmmer.a || die + dolib easel/libeasel.a || die + insinto /usr/share/${PN} + doins -r tutorial || die + dodoc RELEASE-NOTES Userguide.pdf +} |