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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-06-21 14:49:00 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-06-21 14:49:00 +0000 |
| commit | 202f73fbd1500f1655a022ea8b42a1e7c287dcd2 (patch) | |
| tree | c4977c65e8df0142e3730b56e893521a88f1bafe /sci-biology | |
| parent | Unmask USE="mmx sse 3dnow 3dnowext" for >= mpg123-1.8.1. (diff) | |
| download | historical-202f73fbd1500f1655a022ea8b42a1e7c287dcd2.tar.gz historical-202f73fbd1500f1655a022ea8b42a1e7c287dcd2.tar.bz2 historical-202f73fbd1500f1655a022ea8b42a1e7c287dcd2.zip | |
Version bump
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/velvet/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/velvet/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/velvet/velvet-0.7.34.ebuild | 40 |
3 files changed, 49 insertions, 2 deletions
diff --git a/sci-biology/velvet/ChangeLog b/sci-biology/velvet/ChangeLog index 705ee8914c49..6e03c332fbe9 100644 --- a/sci-biology/velvet/ChangeLog +++ b/sci-biology/velvet/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/velvet # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.1 2009/06/05 10:06:43 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.2 2009/06/21 14:49:00 weaver Exp $ + +*velvet-0.7.34 (21 Jun 2009) + + 21 Jun 2009; Andrey Kislyuk <weaver@gentoo.org> +velvet-0.7.34.ebuild: + Version bump *velvet-0.7.31 (05 Jun 2009) diff --git a/sci-biology/velvet/Manifest b/sci-biology/velvet/Manifest index 3edf3221c791..2bda698230f9 100644 --- a/sci-biology/velvet/Manifest +++ b/sci-biology/velvet/Manifest @@ -1,4 +1,6 @@ DIST velvet_0.7.31.tgz 3423497 RMD160 f0d7b0c67e500417f8ecb8dd456fa5213f34d14b SHA1 f5693eefd0e9b6aace3edb9c2c9139d10d3c8449 SHA256 a1f3e20090e630aeaf76622680d1f1df53d0824dc20c7120976c53f889038430 +DIST velvet_0.7.34.tgz 3761893 RMD160 083ce77b25bfa6b63322035a018a2ee438a73eae SHA1 b2a64ccee05a73890ecad4506ace3547dbd6ccae SHA256 30e0f393f3a346bed2dc1c8fc2fd28d2cda6b76a11dded67b58a4777f1370598 EBUILD velvet-0.7.31.ebuild 1064 RMD160 01079600826ecda926519a44f6f86e484e56e9b6 SHA1 d3784dd2fd7165cad98d639affdbefc283b4fb1b SHA256 05e679ba5d768304b365d41640005c986baf2fc83655cedf0332691728380293 -MISC ChangeLog 366 RMD160 7f0730307e94cda8f11c48043a3688bceb1dbc14 SHA1 227a0ab536f7174a060cf3eecf82bf707b905a4a SHA256 58de4750d435d790a00b811d646868c9f6fac1a7031d61a409a5c4a0aa6acefb +EBUILD velvet-0.7.34.ebuild 1064 RMD160 6604b6426e6881239e66322e39b33bbc37cc9159 SHA1 1ab3a11a2fbd71b1bee9aad137093059a6f0983f SHA256 e7f657d0d9d774bd41930845c548c8016ee6c74b4f0e6341cb91e2e23677b7e1 +MISC ChangeLog 485 RMD160 b6a5a5d8d174b98c84535db44787da7f5ea2aa77 SHA1 9becdb2d24cce3c56b5fd4de51e1faeddba55f83 SHA256 80a0cfdd832d1b2478a9b1d7fc832a50b75d29e0be2ec4ac17714d6218de96fb MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/velvet/velvet-0.7.34.ebuild b/sci-biology/velvet/velvet-0.7.34.ebuild new file mode 100644 index 000000000000..1caac6c8fcc8 --- /dev/null +++ b/sci-biology/velvet/velvet-0.7.34.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.34.ebuild,v 1.1 2009/06/21 14:49:00 weaver Exp $ + +EAPI="2" + +MY_P="${PN}_${PV}" + +DESCRIPTION="A sequence assembler for very short reads" +HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/" +SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz" + +LICENSE="GPL-2" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + rm -rf "${S}"/third-party/zlib* + sed -i -e '/\(CFLAGS\|LDFLAGS\|Z_LIB_DIR\|Z_LIB_FILES\) *= */d' \ + -e '1 a CFLAGS+= -Wall' -e '1 a LDFLAGS+= -lm -lz' \ + -e '/default :/ s/zlib//' -e '/color :/ s/zlib//' \ + "${S}"/Makefile || die + sed -i -e '/zlib.h/d' -e '1 i #include <zlib.h>' "${S}"/src/readSet.c || die +} + +src_compile() { + emake -j1 || die + emake -j1 color || die +} + +src_install() { + dobin velvet{g,h,g_de,h_de} third-party/layout/graph2.py third-party/afg_handling/*.pl || die + dodoc Manual.pdf CREDITS.txt +} |