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| author |   Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> | 2010-09-17 20:43:01 +0000 |
|---|---|---|
| committer | Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> | 2010-09-17 20:43:01 +0000 |
| commit | 0dfe71a5918414edb22f092e31f825e15bd5f518 (patch) | |
| tree | 609e177eede1ea11d5eb0f2e5f956faa04ddf1de /sci-biology | |
| parent | Bumps to address IA32 syscall exploit. (diff) | |
| download | historical-0dfe71a5918414edb22f092e31f825e15bd5f518.tar.gz historical-0dfe71a5918414edb22f092e31f825e15bd5f518.tar.bz2 historical-0dfe71a5918414edb22f092e31f825e15bd5f518.zip | |
Version bump.
Package-Manager: portage-2.2_rc83_p15/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/biopython/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/biopython/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/biopython/biopython-1.55.ebuild | 54 |
3 files changed, 64 insertions, 2 deletions
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog index 5b3546cbea16..a72ec464f973 100644 --- a/sci-biology/biopython/ChangeLog +++ b/sci-biology/biopython/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/biopython # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.46 2010/09/12 20:07:53 klausman Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.47 2010/09/17 20:43:00 arfrever Exp $ + +*biopython-1.55 (17 Sep 2010) + + 17 Sep 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> + +biopython-1.55.ebuild: + Version bump. 12 Sep 2010; Tobias Klausmann <klausman@gentoo.org> biopython-1.54.ebuild: Stable on alpha, bug #327151 diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest index 0c1ecd4b41a0..53dc180147a7 100644 --- a/sci-biology/biopython/Manifest +++ b/sci-biology/biopython/Manifest @@ -1,7 +1,9 @@ AUX biopython-1.51-flex.patch 782 RMD160 a69deb13b97f80ec6aed7ec7975e0de4846fe2fa SHA1 dad1c962a632efeccbbec61b79feb71abccbe030 SHA256 ad957b435fc70b218a7a65eb492b0eae5f82b7c6371d2f1451c9dd714fa056dc DIST biopython-1.53.tar.gz 4284683 RMD160 9f49df8031cf2d60f4a77624dd6c188fb5c63418 SHA1 182c71358396261d86f8534b4a24f5d33673f80e SHA256 0db8bf8d37641fdfc6a8aac248de3d8cb4111e55484deb43f67e8d7ad082013f DIST biopython-1.54.tar.gz 6445527 RMD160 4822a8a50b1e2d861192ffd6aba39b7a807e9b7e SHA1 db23fd12efec2931fdbfac4b85854212f897ab53 SHA256 6f704698d68af75b3601b2a862386682b2317038b8bbaf2eb2ad68c1e1a4dc35 +DIST biopython-1.55.tar.gz 6648674 RMD160 df5eba77d2da622fd7e9f903f8856e9e553c00f9 SHA1 a3cc0efe0d3254ab612b870c5909660694c30b65 SHA256 968d227f3fa567d307ea3078c396faa06c76a9d29e45af669df454ba3063e843 EBUILD biopython-1.53.ebuild 1485 RMD160 8ded00f35a042b1f8c57c0e49432159d052a5806 SHA1 54b98213d59fdf1c31a04fa9172b587ffe800c7a SHA256 b7a26ec3c3fe399e54e5912fc03bcc49b3aeaae12accf8b10259c134833d0b58 EBUILD biopython-1.54.ebuild 1506 RMD160 abfa5221e5ad1cc215ccc129765b392b37294291 SHA1 799e152e394661e6e5b8e2f57fd3ee44f770cd82 SHA256 25e8aebe1922dae638cac5ade37218559e0f55ee0ac0fa5567afcebd38735e29 -MISC ChangeLog 8093 RMD160 3521eb2a3c59ba2faab547c0ecaa05b15bf169b1 SHA1 d361b54e59cefeb3e20030f4b2ae16ccb3cd0471 SHA256 15d4001a9483b19d22fa2c8bea058d25200a9637ca11baa6f30a3758bc62dfde +EBUILD biopython-1.55.ebuild 1453 RMD160 bcf68b451f5f16aa2fd9ac1882a3cd177e667824 SHA1 27520121dd9086205f8e68b15aed36c1e43576d3 SHA256 87f036cf97f743b68d182a0ed7d4052dc38be26521e01d4e99c9bc890e21eb8c +MISC ChangeLog 8240 RMD160 102f788af3c89ffc0c65548c669692fe66fb408f SHA1 ccf2bb9a190bce4fb308004bd93d22514f1b8a3e SHA256 adcb65fc844cb1bcb0376886bdc152cfbebfba56678694de6fb12df5ac547d25 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f diff --git a/sci-biology/biopython/biopython-1.55.ebuild b/sci-biology/biopython/biopython-1.55.ebuild new file mode 100644 index 000000000000..7abdba5eb135 --- /dev/null +++ b/sci-biology/biopython/biopython-1.55.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v 1.1 2010/09/17 20:43:01 arfrever Exp $ + +EAPI="3" +PYTHON_DEPEND="2" +SUPPORT_PYTHON_ABIS="1" +RESTRICT_PYTHON_ABIS="3.*" + +inherit distutils eutils + +DESCRIPTION="Biopython - Python modules for computational molecular biology" +HOMEPAGE="http://www.biopython.org http://pypi.python.org/pypi/biopython" +SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" + +LICENSE="as-is" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~ppc ~sparc ~x86" +IUSE="mysql postgres" + +RDEPEND="dev-python/numpy + >=dev-python/reportlab-2.0 + mysql? ( dev-python/mysql-python ) + postgres? ( dev-python/psycopg )" +DEPEND="${RDEPEND} + sys-devel/flex" + +PYTHON_CFLAGS=("2.* + -fno-strict-aliasing") + +DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1" +DOCS="CONTRIB DEPRECATED NEWS README" +PYTHON_MODNAME="Bio BioSQL" + +src_prepare() { + distutils_src_prepare + epatch "${FILESDIR}/${PN}-1.51-flex.patch" +} + +src_test() { + testing() { + cd Tests + PYTHONPATH="$(ls -d ../build/lib.*)" "$(PYTHON)" run_tests.py + } + python_execute_function --nonfatal -s testing +} + +src_install() { + distutils_src_install + + insinto /usr/share/doc/${PF} + doins -r Doc/* || die "Installation of documentation failed" + insinto /usr/share/${PN} + cp -r --preserve=mode Scripts Tests "${ED}usr/share/${PN}" || die "Installation of shared files failed" +} |