Version bump, take maintainership

Package-Manager: portage-2.2_rc30/cvs/Linux x86_64

4 files changed, 75 insertions, 3 deletions

diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog
index b5b266530c59..4b7872f69ac7 100644
--- a/sci-biology/t-coffee/ChangeLog
+++ b/sci-biology/t-coffee/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/t-coffee
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.36 2009/03/24 21:32:36 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.37 2009/11/24 18:21:23 weaver Exp $
+
+*t-coffee-8.14 (24 Nov 2009)
+
+  24 Nov 2009; Andrey Kislyuk <weaver@gentoo.org> metadata.xml,
+  +t-coffee-8.14.ebuild:
+  Version bump, assume maintainership
 
   24 Mar 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
   Giving up maintainership of this package.
diff --git a/sci-biology/t-coffee/Manifest b/sci-biology/t-coffee/Manifest
index 286eadb8fb01..fe00007918c3 100644
--- a/sci-biology/t-coffee/Manifest
+++ b/sci-biology/t-coffee/Manifest
@@ -2,9 +2,11 @@ DIST T-COFFEE_distribution_Version_5.31.tar.gz 2857478 RMD160 95cb261c57fe31b3c2
 DIST T-COFFEE_distribution_Version_5.65.tar.gz 2892013 RMD160 50c04dfbda649ebbf0e691a74bd62433bb1dbd14 SHA1 a8dc4bcc37eaa8237670c9daf1b260c8452fab89 SHA256 536cfe25648fbaf4d96baf36b3c8d4d2d81e97b2939e09e89880cae39893d0c6
 DIST T-COFFEE_distribution_Version_6.82.tar.gz 2377424 RMD160 01e7e43da5637114ded1f5509f3fae605ed4f08b SHA1 ea02ed7908a3628772ea72bc4226529586247580 SHA256 23329516078fa0d242a0160e807e71bbe221462323892f8ddcc62affa569628a
 DIST T-COFFEE_distribution_Version_7.54.tar.gz 3968725 RMD160 d11964db5232d137bf0db8101dfb75b1fde25936 SHA1 a302954a10860455bc23f924628598757c39eb12 SHA256 9d7d56abc000b61b48908fa4f93fb382a35df11c883966a0119605cd16aa668e
+DIST T-COFFEE_distribution_Version_8.14.tar.gz 4202237 RMD160 b292e4d4dd6576ad10dacafbb19eaa4f9154b85c SHA1 0286f719569f6717f879b38af520939f4399ab07 SHA256 ffc527e65e81cabc912a2816895efd46fb28bbd45e50327cd7e5d01ba88bcb03
 EBUILD t-coffee-5.31.ebuild 1997 RMD160 7612d1f86bd8b702c196b0269f093fad63482be2 SHA1 bf6f4e8de8e451207d618de60b56926d5fd0b525 SHA256 f19291307534c6168cc046c0c8a74d622aa63197d07bdff756c18a6e9159bc55
 EBUILD t-coffee-5.65.ebuild 1999 RMD160 7ae18da2d689343547258b54f1de66f289f47114 SHA1 6518aae4c5e8b9bc55eaff6c0e763ae22995c393 SHA256 25d353182a9e946df52ad7dea404800a169067c77441c8d2456042b0cbea4d25
 EBUILD t-coffee-6.82.ebuild 1838 RMD160 79975b36ece635a8473b9843a04d19e7bdf16584 SHA1 6b0957b53cbcc8bfc945ea32613718dc8ff30fce SHA256 3ec2720e76effedc6f76d81c273de59a3ef1fe9aa16a4258923245b2543e0d2f
 EBUILD t-coffee-7.54.ebuild 1857 RMD160 ee23165c9f4e40b608c960d6c14886b1a680a4e6 SHA1 eb77681d7a1facb7fdab7c0ca45fe6dc02b99e61 SHA256 3da47ef23cf41088177fe5c8b90f96627c0f29f777145e79bf28b7aab618f372
-MISC ChangeLog 4871 RMD160 92640b6b071ce805cb8b90be3e8658c0a8dc39e5 SHA1 651e23fcf50aeb157e5b9d7e9eced6b2b1451e70 SHA256 19e9a9a8fc9ec98afe31356fc50d010a5315d5afade7f3b5030f8a620076c52f
-MISC metadata.xml 666 RMD160 ec61eb719b37e3163f0c115b796c5b87d934711f SHA1 3109f9ecbe3a2f682b440feb9386c3bc11bcd027 SHA256 bac3acc4bbb40a72054a3a37b32f81221d0656eebad9c23dffb595d3146f646a
+EBUILD t-coffee-8.14.ebuild 1866 RMD160 a873c3052cdcf6bed77352273750f3a13577d8e6 SHA1 a98f6ee46f85c9e8ee80ebf3df6714dbee0a0297 SHA256 34eebb96c8d0aec7eb47c04fbe82d6669fcb657e88240e6b8d6724c6c87b5c47
+MISC ChangeLog 5027 RMD160 97eeb22998cc18d9b29b6b42b67516dc982549cd SHA1 86ddd287c2ba129280bbdfbd170ab9e5f982ccda SHA256 03d94f1d24bb6dd3cad8875279716145490ebfe3fcbd75f7ac01432fca22da61
+MISC metadata.xml 760 RMD160 b9b95d31917ca092fbc88aaf871ffc6c22746860 SHA1 ee9d60b1947e1fb1542488003713ec1bcf3f3b71 SHA256 9d60cbec2e12219f15e311a1e8cb694b77fd7897c98186be3012f815c0f7bd12
diff --git a/sci-biology/t-coffee/metadata.xml b/sci-biology/t-coffee/metadata.xml
index 228a09e08036..3ea57edd4222 100644
--- a/sci-biology/t-coffee/metadata.xml
+++ b/sci-biology/t-coffee/metadata.xml
@@ -1,6 +1,10 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
 	<herd>sci-biology</herd>
 	<longdescription>
 		T-Coffee is a multiple sequence alignment package. Given a set of
diff --git a/sci-biology/t-coffee/t-coffee-8.14.ebuild b/sci-biology/t-coffee/t-coffee-8.14.ebuild
new file mode 100644
index 000000000000..773631d503d6
--- /dev/null
+++ b/sci-biology/t-coffee/t-coffee-8.14.ebuild
@@ -0,0 +1,60 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-8.14.ebuild,v 1.1 2009/11/24 18:21:23 weaver Exp $
+
+EAPI="2"
+
+inherit toolchain-funcs flag-o-matic
+
+DESCRIPTION="A multiple sequence alignment package"
+LICENSE="GPL-2"
+HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
+SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
+
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~ppc ~x86"
+
+DEPEND="sci-biology/clustalw"
+RDEPEND="${DEPEND}"
+
+TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
+S="${TCDIR}/t_coffee_source"
+
+die_compile() {
+	echo
+	eerror "If you experience an internal compiler error (consult the above"
+	eerror "messages), try compiling t-coffee using very modest compiler flags."
+	eerror "See bug #114745 on the Gentoo Bugzilla for more details."
+	die "Compilation failed"
+}
+
+src_compile() {
+	[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
+	[[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
+	CC="$(tc-getCC)" CFLAGS="${CFLAGS}" emake || die_compile
+}
+
+src_install() {
+	dobin t_coffee || die "Failed to install program."
+
+	insinto /usr/share/${PN}/lib/html
+	doins "${TCDIR}"/html/* \
+		|| die "Failed to install Web interface files."
+
+	cd "${TCDIR}"/doc
+	dodoc aln_compare.doc.txt seq_reformat.doc.txt \
+			t_coffee_technical.txt t_coffee_tutorial.txt \
+			|| die "Failed to install text documentation."
+
+	dohtml t_coffee_technical.htm t_coffee_tutorial.htm \
+		|| die "Failed to install HTML documentation."
+
+	insinto /usr/share/doc/${PF}
+	doins t_coffee_technical.doc t_coffee_tutorial.doc \
+		|| die "Failed to install DOC documentation."
+
+	insinto /usr/share/${PN}/example
+	doins "${TCDIR}"/example/* \
+		|| die "Failed to install example files."
+}