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authorDonnie Berkholz <dberkholz@gentoo.org>2004-04-22 22:39:38 +0000
committerDonnie Berkholz <dberkholz@gentoo.org>2004-04-22 22:39:38 +0000
commitb06d41a74c58f6035587aba09d3205c4e60b32f0 (patch)
treefdd566f99dfc6ac15250000ba91dd2291a071bae /app-sci
parentAdd app-shells/tcsh to dependencies (#48691). (diff)
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Mark 3.2.1 stable on x86. Remove old versions.
Diffstat (limited to 'app-sci')
-rw-r--r--app-sci/gromacs/ChangeLog7
-rw-r--r--app-sci/gromacs/Manifest11
-rw-r--r--app-sci/gromacs/files/digest-gromacs-3.1.4-r11
-rw-r--r--app-sci/gromacs/files/digest-gromacs-3.1.4-r21
-rw-r--r--app-sci/gromacs/files/digest-gromacs-3.21
-rw-r--r--app-sci/gromacs/files/gromacs-3.2-all-static-fix.patch12
-rw-r--r--app-sci/gromacs/gromacs-3.1.4-r1.ebuild46
-rw-r--r--app-sci/gromacs/gromacs-3.1.4-r2.ebuild54
-rw-r--r--app-sci/gromacs/gromacs-3.2.1.ebuild4
-rw-r--r--app-sci/gromacs/gromacs-3.2.ebuild70
10 files changed, 10 insertions, 197 deletions
diff --git a/app-sci/gromacs/ChangeLog b/app-sci/gromacs/ChangeLog
index 41ace38f80db..27a726cac76c 100644
--- a/app-sci/gromacs/ChangeLog
+++ b/app-sci/gromacs/ChangeLog
@@ -1,6 +1,11 @@
# ChangeLog for app-sci/gromacs
# Copyright 2002-2004 Gentoo Technologies, Inc.; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/gromacs/ChangeLog,v 1.11 2004/04/22 22:36:01 spyderous Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/gromacs/ChangeLog,v 1.12 2004/04/22 22:39:38 spyderous Exp $
+
+ 22 Apr 2004; Donnie Berkholz <spyderous@gentoo.org>;
+ -files/gromacs-3.2-all-static-fix.patch, -gromacs-3.1.4-r1.ebuild,
+ -gromacs-3.1.4-r2.ebuild, gromacs-3.2.1.ebuild, -gromacs-3.2.ebuild:
+ Mark 3.2.1 stable on x86. Remove old versions.
22 Apr 2004; Donnie Berkholz <spyderous@gentoo.org>;
gromacs-3.1.4-r1.ebuild, gromacs-3.2.1.ebuild:
diff --git a/app-sci/gromacs/Manifest b/app-sci/gromacs/Manifest
index 36b85bd01ccb..01450e28359d 100644
--- a/app-sci/gromacs/Manifest
+++ b/app-sci/gromacs/Manifest
@@ -1,11 +1,4 @@
-MD5 95da862113ccf291810d45e4953a2dcc ChangeLog 2564
+MD5 515d5d33f7fed77f164bbee219895316 ChangeLog 2809
MD5 af1bfbb0777267a03e889b08173f2757 metadata.xml 248
-MD5 8d445ebd815e719dfefc562269212981 gromacs-3.1.4-r1.ebuild 1434
-MD5 76479670c978b2f8e8386d6efb46160c gromacs-3.1.4-r2.ebuild 1567
-MD5 5f7482cfcfadbebcce7f201bc8ba2eeb gromacs-3.2.ebuild 1960
-MD5 2a9b9c3ef97e502ffcb447761e433db3 gromacs-3.2.1.ebuild 1909
-MD5 5322e3229934a2776885a05df3606fb0 files/digest-gromacs-3.1.4-r1 66
-MD5 5322e3229934a2776885a05df3606fb0 files/digest-gromacs-3.1.4-r2 66
-MD5 b51100cd55b8fa6f7527a6e93c50fa51 files/gromacs-3.2-all-static-fix.patch 596
-MD5 bcf8a5876f341528c9cc49932f63ac10 files/digest-gromacs-3.2 64
+MD5 33e0e384c9e0c4578be3c72f097f5f5b gromacs-3.2.1.ebuild 1908
MD5 e6cada3bcb0c80d058e7be754fde4612 files/digest-gromacs-3.2.1 66
diff --git a/app-sci/gromacs/files/digest-gromacs-3.1.4-r1 b/app-sci/gromacs/files/digest-gromacs-3.1.4-r1
deleted file mode 100644
index 7f41e1fba1e3..000000000000
--- a/app-sci/gromacs/files/digest-gromacs-3.1.4-r1
+++ /dev/null
@@ -1 +0,0 @@
-MD5 835247417207a9852583a78f835a7da2 gromacs-3.1.4.tar.gz 2713384
diff --git a/app-sci/gromacs/files/digest-gromacs-3.1.4-r2 b/app-sci/gromacs/files/digest-gromacs-3.1.4-r2
deleted file mode 100644
index 7f41e1fba1e3..000000000000
--- a/app-sci/gromacs/files/digest-gromacs-3.1.4-r2
+++ /dev/null
@@ -1 +0,0 @@
-MD5 835247417207a9852583a78f835a7da2 gromacs-3.1.4.tar.gz 2713384
diff --git a/app-sci/gromacs/files/digest-gromacs-3.2 b/app-sci/gromacs/files/digest-gromacs-3.2
deleted file mode 100644
index e328437611aa..000000000000
--- a/app-sci/gromacs/files/digest-gromacs-3.2
+++ /dev/null
@@ -1 +0,0 @@
-MD5 b7b1ec42f0207794bb3a24fef541f3f5 gromacs-3.2.tar.gz 3303227
diff --git a/app-sci/gromacs/files/gromacs-3.2-all-static-fix.patch b/app-sci/gromacs/files/gromacs-3.2-all-static-fix.patch
deleted file mode 100644
index 79682e6b0593..000000000000
--- a/app-sci/gromacs/files/gromacs-3.2-all-static-fix.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -urN gromacs-3.2.orig/configure.ac gromacs-3.2/configure.ac
---- gromacs-3.2.orig/configure.ac 2004-02-29 22:50:34.000000000 -0500
-+++ gromacs-3.2/configure.ac 2004-02-29 22:42:19.000000000 -0500
-@@ -178,7 +178,7 @@
-
-
- AC_ARG_ENABLE(all-static,
-- [ --enable-all-static make completely static binaries],enable_all_static=yes, enable_all_static=no)
-+ [ --enable-all-static make completely static binaries],, enable_all_static=no)
- # Dont add the -all-static flag until after the compiler test.
-
- ### Compile without FFTW - disabling it means you can't use PME or PPPM!
diff --git a/app-sci/gromacs/gromacs-3.1.4-r1.ebuild b/app-sci/gromacs/gromacs-3.1.4-r1.ebuild
deleted file mode 100644
index d208921b06ce..000000000000
--- a/app-sci/gromacs/gromacs-3.1.4-r1.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2004 Gentoo Technologies, Inc.
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/gromacs/gromacs-3.1.4-r1.ebuild,v 1.6 2004/04/22 22:36:01 spyderous Exp $
-
-IUSE="mpi"
-
-DESCRIPTION="The ultimate molecular dynamics simulation package"
-SRC_URI="ftp://ftp.gromacs.org/pub/${PN}/${P}.tar.gz"
-HOMEPAGE="http://www.gromacs.org/"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="x86"
-
-#mpi is a local USE flag now
-#May become official when situation with mpich is cleared (now the only mpi implementation awailable is lam-mpi)
-DEPEND="=dev-libs/fftw-2.1*
- mpi? ( >=sys-cluster/lam-mpi-6.5.6 )
- app-shells/tcsh
- >=sys-devel/binutils-2.10.91.0.2"
-
-
-src_compile() {
-#!!!Please note!!!
-#for troublesome work gromacs should be compiled with the same mpi setting as fftw.
-#Unfortunately portage cannot trace optional dependencies of dependencies at present.
-#Until this (planned) feature is completed, please try to do corresponding check yourself.
- local myconf=""
- myconf="${myconf} `use_enable mpi`"
-
- econf \
- --enable-fortran \
- --datadir=/usr/share/${P} ${myconf} || die "configure failed"
- emake || die
-}
-
-src_install () {
- make DESTDIR=${D} install || die
-
- # Install documentation.
- dodoc AUTHORS COPYING INSTALL README
-
- #move html docs under /usr/share/doc
- #and leave examples and templates under /usr/gromacs...
- mv ${D}/usr/share/${P}/html ${D}/usr/share/doc/${PF}
-}
diff --git a/app-sci/gromacs/gromacs-3.1.4-r2.ebuild b/app-sci/gromacs/gromacs-3.1.4-r2.ebuild
deleted file mode 100644
index ffda87f0495d..000000000000
--- a/app-sci/gromacs/gromacs-3.1.4-r2.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2004 Gentoo Technologies, Inc.
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/gromacs/gromacs-3.1.4-r2.ebuild,v 1.1 2004/02/29 01:35:20 spyderous Exp $
-
-IUSE="mpi"
-
-DESCRIPTION="The ultimate molecular dynamics simulation package"
-SRC_URI="ftp://ftp.gromacs.org/pub/${PN}/${P}.tar.gz"
-HOMEPAGE="http://www.gromacs.org/"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~x86"
-
-#mpi is a local USE flag now
-#May become official when situation with mpich is cleared (now the only mpi implementation awailable is lam-mpi)
-DEPEND="=dev-libs/fftw-2.1*
- mpi? ( >=sys-cluster/lam-mpi-6.5.6 )
- >=sys-devel/binutils-2.10.91.0.2"
-
-
-src_compile() {
-#!!!Please note!!!
-#for troublesome work gromacs should be compiled with the same mpi setting as fftw.
-#Unfortunately portage cannot trace optional dependencies of dependencies at present.
-#Until this (planned) feature is completed, please try to do corresponding check yourself.
- local myconf=""
- myconf="${myconf} `use_enable mpi`"
-
- # Enable asm on Alphas
- if [ "${ARCH}" = "alpha" ]
- then
- myconf="${myconf} --enable-axp-asm"
- fi
-
- econf \
- --enable-fortran \
- --datadir=/usr/share/${P} \
- --bindir=/usr/bin \
- --libdir=/usr/lib \
- ${myconf} || die "configure failed"
- emake || die
-}
-
-src_install () {
- make DESTDIR=${D} install || die
-
- # Install documentation.
- dodoc AUTHORS COPYING INSTALL README
-
- #move html docs under /usr/share/doc
- #and leave examples and templates under /usr/gromacs...
- mv ${D}/usr/share/${P}/html ${D}/usr/share/doc/${PF}
-}
diff --git a/app-sci/gromacs/gromacs-3.2.1.ebuild b/app-sci/gromacs/gromacs-3.2.1.ebuild
index d63595d6e671..3d7aca85899c 100644
--- a/app-sci/gromacs/gromacs-3.2.1.ebuild
+++ b/app-sci/gromacs/gromacs-3.2.1.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2004 Gentoo Technologies, Inc.
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/gromacs/gromacs-3.2.1.ebuild,v 1.3 2004/04/22 22:36:01 spyderous Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/gromacs/gromacs-3.2.1.ebuild,v 1.4 2004/04/22 22:39:38 spyderous Exp $
inherit eutils
@@ -12,7 +12,7 @@ HOMEPAGE="http://www.gromacs.org/"
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="~x86 ~amd64"
+KEYWORDS="x86 ~amd64"
#mpi is a local USE flag now
#May become official when situation with mpich is cleared (now the only mpi implementation awailable is lam-mpi)
diff --git a/app-sci/gromacs/gromacs-3.2.ebuild b/app-sci/gromacs/gromacs-3.2.ebuild
deleted file mode 100644
index e4a7c49c3b58..000000000000
--- a/app-sci/gromacs/gromacs-3.2.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2004 Gentoo Technologies, Inc.
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/gromacs/gromacs-3.2.ebuild,v 1.1 2004/03/01 04:16:43 spyderous Exp $
-
-inherit eutils
-
-IUSE="mpi xml2"
-
-DESCRIPTION="The ultimate molecular dynamics simulation package"
-SRC_URI="ftp://ftp.gromacs.org/pub/${PN}/${P}.tar.gz"
-HOMEPAGE="http://www.gromacs.org/"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~x86"
-
-#mpi is a local USE flag now
-#May become official when situation with mpich is cleared (now the only mpi implementation awailable is lam-mpi)
-DEPEND="=dev-libs/fftw-2.1*
- mpi? ( >=sys-cluster/lam-mpi-6.5.6 )
- >=sys-devel/binutils-2.10.91.0.2
- xml2? ( dev-libs/libxml2 )"
-
-src_unpack() {
- unpack ${A}
- epatch ${FILESDIR}/${P}-all-static-fix.patch
-}
-
-src_compile() {
-#!!!Please note!!!
-#for troublesome work gromacs should be compiled with the same mpi setting as fftw.
-#Unfortunately portage cannot trace optional dependencies of dependencies at present.
-#Until this (planned) feature is completed, please try to do corresponding check yourself.
- local myconf
-
- # Enable asm on Alphas
- if [ "${ARCH}" = "alpha" ]
- then
- myconf="${myconf} --enable-axp-asm"
- fi
-
- # static should work but something's broken.
- # gcc spec file may be screwed up.
- # Static linking should try -lgcc instead of -lgcc_s.
- # For more info:
- # http://lists.debian.org/debian-gcc/2002/debian-gcc-200201/msg00150.html
- econf \
- --enable-fortran \
- --datadir=/usr/share/${P} \
- --bindir=/usr/bin \
- --libdir=/usr/lib \
- `use_with xml2 xml` \
- `use_enable mpi` \
- ${myconf} || die "configure failed"
-
-# `use_enable static all-static` \
-
- emake || die
-}
-
-src_install () {
- make DESTDIR=${D} install || die
-
- # Install documentation.
- dodoc AUTHORS COPYING INSTALL README
-
- #move html docs under /usr/share/doc
- #and leave examples and templates under /usr/gromacs...
- mv ${D}/usr/share/${P}/html ${D}/usr/share/doc/${PF}
-}