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# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
inherit versionator
MY_PV=$(replace_all_version_separators '-')
DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA"
HOMEPAGE="http://repeatmasker.org/"
SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz"
LICENSE="OSL-2.1"
SLOT="0"
KEYWORDS="~x86"
IUSE=""
DEPEND=""
RDEPEND="sci-biology/phrap
sci-biology/repeatmasker-libraries"
S="${WORKDIR}/RepeatMasker"
src_compile() {
sed -i 's/system( "clear" );//' "${S}/configure"
cat << END | "${S}/configure" || die "configure failed"
/usr/bin
/usr/share/${PN}
1
/usr/bin
Y
4
END
sed -i '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' "${S}/RepeatMaskerConfig.pm" || die "sed failed"
sed -i 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' "${S}"/{DateRepeats,ProcessRepeats,RepeatMasker} || die "sed failed"
}
src_install() {
dobin DateRepeats ProcessRepeats RepeatMasker
insinto /usr/share/${PN}/lib
doins "${S}"/*.pm
insinto /usr/share/${PN}
doins -r util Matrices
keepdir /usr/share/${PN}/Libraries
dodoc README INSTALL repeatmasker.help daterepeats.help
}
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