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#!/bin/bash
DATE=$(date "+%Y%m%d")
CHANGE_ENTRY="automatic bump"
# Find the Documentation dir from sci overlay
if [[ -f $(basename $0) ]]; then
REPO_DOC=$(pwd)
else
REPO_DOC=$(dirname $0)
fi
cd /tmp;
wget http://www.ncbi.nlm.nih.gov/blast/docs/update_blastdb.pl >& /dev/null
# Ask for which database
echo "Which db should be updated ?"
echo ""
perl -w update_blastdb.pl --passiv --showall
echo ""
read DB
# Fetch the database and rename it
perl -w update_blastdb.pl --passiv ${DB}
for mydb in ${DB}*; do
mv ${mydb} ${mydb#.tar.gz}-${DATE}.tar.gz
done
cd ${REPO_DOC}/../sci-libs/blast-db-${DB};
git mv blast-db-${DB}*ebuild blast-db-${DB}-${DATE}.ebuild
git add .
echangelog "${CHANGE_ENTRY}"
reapoman -d -v fix
git add .
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