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# ChangeLog for sci-biology/samtools
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.24 2015/04/07 14:35:10 jlec Exp $
28 Feb 2015; Justin Lecher <jlec@gentoo.org>
files/samtools-1.2-buildsystem.patch, samtools-1.2.ebuild:
Fix depend rules in make which break due to unbundling of htslib, #541134; use
LD_LIBRARY_PATH druing tests
*samtools-1.2 (18 Feb 2015)
18 Feb 2015; Justin Lecher <jlec@gentoo.org>
+files/samtools-1.2-buildsystem.patch, +samtools-1.2.ebuild:
Version Bump, #540356
*samtools-1.1 (06 Jan 2015)
06 Jan 2015; Justin Lecher <jlec@gentoo.org> +samtools-1.1.ebuild,
+files/samtools-1.1-buildsystem.patch:
Version Bump
*samtools-1.0-r1 (25 Sep 2014)
25 Sep 2014; Justin Lecher <jlec@gentoo.org> +samtools-1.0-r1.ebuild,
+files/samtools-1.0-buildsystem.patch:
Install bam headers and create libbam.so, #523644
24 Sep 2014; Justin Lecher <jlec@gentoo.org> samtools-1.0.ebuild:
Add missing build dep, #523586
*samtools-1.0 (20 Sep 2014)
20 Sep 2014; Justin Lecher <jlec@gentoo.org> -samtools-0.1.18.ebuild,
-samtools-0.1.18-r2.ebuild, -samtools-0.1.18-r3.ebuild,
samtools-0.1.19-r2.ebuild, +samtools-1.0.ebuild:
Version Bump, #523224; drop old
*samtools-0.1.19-r2 (23 Mar 2014)
23 Mar 2014; Justin Lecher <jlec@gentoo.org> -samtools-0.1.19-r1.ebuild,
+samtools-0.1.19-r2.ebuild:
Fix symlink creation, thanks Martin Mokrejs telling me that
11 Feb 2014; Fabian Groffen <grobian@gentoo.org> samtools-0.1.19-r1.ebuild:
Reference correct library name on Darwin, thanks Linlin Yan in bug #491812
*samtools-0.1.19-r1 (06 Dec 2013)
06 Dec 2013; Justin Lecher <jlec@gentoo.org> -samtools-0.1.19.ebuild,
+samtools-0.1.19-r1.ebuild, files/samtools-0.1.19-buildsystem.patch:
Fix underlinking
06 Dec 2013; Justin Lecher <jlec@gentoo.org> samtools-0.1.12.ebuild,
samtools-0.1.18.ebuild, samtools-0.1.18-r2.ebuild, samtools-0.1.18-r3.ebuild,
samtools-0.1.19.ebuild:
Keyword for *-linux, tested by me
*samtools-0.1.19 (20 Sep 2013)
20 Sep 2013; Justin Lecher <jlec@gentoo.org> +samtools-0.1.19.ebuild,
+files/samtools-0.1.19-buildsystem.patch:
Version Bump, #485450
*samtools-0.1.18-r3 (29 Mar 2013)
29 Mar 2013; Justin Lecher <jlec@gentoo.org> +samtools-0.1.18-r3.ebuild:
Install bcftools and vcfutils.pl pointed out by mahnmut
11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
*samtools-0.1.18-r2 (27 Jan 2013)
27 Jan 2013; Justin Lecher <jlec@gentoo.org> -samtools-0.1.18-r1.ebuild,
+samtools-0.1.18-r2.ebuild:
Add missing deps and correct sed lines, #454134; thanks Torsten Veller
*samtools-0.1.18-r1 (23 Jan 2013)
23 Jan 2013; Justin Lecher <jlec@gentoo.org> -samtools-0.1.12a-r1.ebuild,
-samtools-0.1.16.ebuild, -samtools-0.1.17.ebuild, +samtools-0.1.18-r1.ebuild,
metadata.xml:
Drop old; use pkg-config to check for libncurses
*samtools-0.1.18 (26 Sep 2011)
26 Sep 2011; Andrey Kislyuk <weaver@gentoo.org> +samtools-0.1.18.ebuild:
Version bump
*samtools-0.1.17 (18 Jul 2011)
18 Jul 2011; Justin Lecher <jlec@gentoo.org> samtools-0.1.12.ebuild,
samtools-0.1.12a-r1.ebuild, samtools-0.1.16.ebuild, +samtools-0.1.17.ebuild:
Version Bump, #375519
*samtools-0.1.16 (30 Apr 2011)
30 Apr 2011; Justin Lecher <jlec@gentoo.org> samtools-0.1.12.ebuild,
samtools-0.1.12a-r1.ebuild, +samtools-0.1.16.ebuild:
Version Bump, #365265
*samtools-0.1.12a-r1 (14 Mar 2011)
14 Mar 2011; Kacper Kowalik <xarthisius@gentoo.org> -samtools-0.1.12a.ebuild,
+samtools-0.1.12a-r1.ebuild:
Drop empty RDEP/DEP, respect CC,LDFLAGS wrt 358563. Thanks to Diego for the
report.
*samtools-0.1.12a (18 Feb 2011)
18 Feb 2011; Andrey Kislyuk <weaver@gentoo.org> +samtools-0.1.12a.ebuild:
Address bug 354941, build library, correct versioning
17 Feb 2011; Thomas Kahle <tomka@gentoo.org> samtools-0.1.12.ebuild:
x86 stable per bug 353566
11 Feb 2011; Markos Chandras <hwoarang@gentoo.org> samtools-0.1.12.ebuild:
Stable on amd64 wrt bug #353566
*samtools-0.1.12 (21 Dec 2010)
21 Dec 2010; Andrey Kislyuk <weaver@gentoo.org> +samtools-0.1.12.ebuild,
+metadata.xml:
Version bump, import from Science overlay
22 Jan 2010; root <root@onyx.(none)>
Version bump
26 Feb 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
New package, ebuild written by me
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