1 files changed, 82 insertions, 13 deletions
diff --git a/sci-chemistry/ccp4i/files/6.1.3-rename-truncate.patch b/sci-chemistry/ccp4i/files/6.1.3-rename-truncate.patch
index 26f1cda3e381..9af60b7c5152 100644
--- a/sci-chemistry/ccp4i/files/6.1.3-rename-truncate.patch
+++ b/sci-chemistry/ccp4i/files/6.1.3-rename-truncate.patch
@@ -1,16 +1,85 @@
---- ./ccp4i/templates/truncate.com.orig	2009-03-02 23:31:04.000000000 -0800
-+++ ./ccp4i/templates/truncate.com	2009-03-02 23:31:08.000000000 -0800
-@@ -11,7 +11,7 @@
- $SYMMETRY symmetry $SPACE_GROUP
- $CELL cell $CELL_1 $CELL_2 $CELL_3 $CELL_4 $CELL_5 $CELL_6
- 
--1 truncate
-+1 ftruncate
-  - { [StringSame $APPLY_TRUNCATE "WILSON" ] } YES | NO
- {[IfSet $ANOMALOUS]} anomalous 
-  - $ANOMALOUS YES | NO
---- ./ccp4i/scripts/truncate.script.orig	2009-03-02 23:39:04.000000000 -0800
-+++ ./ccp4i/scripts/truncate.script	2009-03-02 23:39:41.000000000 -0800
+diff --git a/ccp4i/crank/plugins/prep/crank_prep.tcl b/ccp4i/crank/plugins/prep/crank_prep.tcl
+index 7d05905..d01f1dc 100755
+--- a/ccp4i/crank/plugins/prep/crank_prep.tcl
++++ b/ccp4i/crank/plugins/prep/crank_prep.tcl
+@@ -226,7 +226,7 @@ proc run_truncate { i j } {
+     set script "$script\n$labout"
+     set script "$script\nEND\n"
+ 	
+-    set run_command "truncate $command << \"$script\""
++    set run_command "ftruncate $command << \"$script\""
+     puts $run_command
+     catch {eval exec $run_command } output 
+     puts $output
+diff --git a/ccp4i/scripts/dtrek2mtz.script b/ccp4i/scripts/dtrek2mtz.script
+index e74aa0d..a2a1adb 100755
+--- a/ccp4i/scripts/dtrek2mtz.script
++++ b/ccp4i/scripts/dtrek2mtz.script
+@@ -36,7 +36,7 @@
+     set HKL_TRUNCATE [GetTmpFileName -ext mtz]
+ 
+     CreateComScript truncate truncate_script
+-    set cmd "[BinPath truncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\""
++    set cmd "[BinPath ftruncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\""
+     set status [Execute $cmd $truncate_script program_status report]
+ 
+     HandleHarvestFile $HARVEST_MODE $HARVEST_PNAME $HARVEST_DNAME truncate
+diff --git a/ccp4i/scripts/import.script b/ccp4i/scripts/import.script
+index 90cba83..1c90c33 100755
+--- a/ccp4i/scripts/import.script
++++ b/ccp4i/scripts/import.script
+@@ -144,7 +144,7 @@ if { $FORMAT ==  "MTZ" } {
+ 
+     set truncatemtz [GetTmpFileName -ext mtz ]
+     CreateComScript truncate truncate_script
+-    set cmd "[BinPath truncate] HKLIN \"$tmpmtz\" HKLOUT \"$truncatemtz\""
++    set cmd "[BinPath ftruncate] HKLIN \"$tmpmtz\" HKLOUT \"$truncatemtz\""
+     set status [Execute $cmd $truncate_script program_status report]
+ 
+ 
+diff --git a/ccp4i/scripts/import_scaled.script b/ccp4i/scripts/import_scaled.script
+index dcc619b..7250513 100755
+--- a/ccp4i/scripts/import_scaled.script
++++ b/ccp4i/scripts/import_scaled.script
+@@ -62,7 +62,7 @@
+ 
+     } else {
+       CreateComScript truncate truncate_script
+-      set cmd "[BinPath truncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\""
++      set cmd "[BinPath ftruncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\""
+       set status [Execute $cmd $truncate_script program_status report]
+ 
+       HandleHarvestFile $HARVEST_MODE $HARVEST_PNAME $HARVEST_DNAME truncate
+diff --git a/ccp4i/scripts/scala.script b/ccp4i/scripts/scala.script
+index 6940ccd..bde10d6 100755
+--- a/ccp4i/scripts/scala.script
++++ b/ccp4i/scripts/scala.script
+@@ -275,7 +275,7 @@ END"
+ 
+       } else {
+         CreateComScript truncate truncate_script
+-        set cmd "[BinPath truncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\""  
++        set cmd "[BinPath ftruncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\""  
+         set status [Execute $cmd $truncate_script $LOG_FILE  program_status report  ]
+       }
+           
+diff --git a/ccp4i/scripts/scalepack2mtz.script b/ccp4i/scripts/scalepack2mtz.script
+index 986e06c..a1947a6 100755
+--- a/ccp4i/scripts/scalepack2mtz.script
++++ b/ccp4i/scripts/scalepack2mtz.script
+@@ -35,7 +35,7 @@
+ 
+     set HKL_TRUNCATE [GetTmpFileName -ext mtz]
+     CreateComScript truncate truncate_script
+-    set cmd "[BinPath truncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\""
++    set cmd "[BinPath ftruncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\""
+     set status [Execute $cmd $truncate_script program_status report]
+ 
+     HandleHarvestFile $HARVEST_MODE $HARVEST_PNAME $HARVEST_DNAME truncate
+diff --git a/ccp4i/scripts/truncate.script b/ccp4i/scripts/truncate.script
+index e0e09ce..2d448a2 100755
+--- a/ccp4i/scripts/truncate.script
++++ b/ccp4i/scripts/truncate.script
 @@ -45,7 +45,7 @@
  
    CreateComScript truncate truncate_script