diff options
Diffstat (limited to 'sci-chemistry/apbs/files/apbs-examples-gentoo.patch')
| -rw-r--r-- | sci-chemistry/apbs/files/apbs-examples-gentoo.patch | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/sci-chemistry/apbs/files/apbs-examples-gentoo.patch b/sci-chemistry/apbs/files/apbs-examples-gentoo.patch new file mode 100644 index 000000000000..5c82bc2882ab --- /dev/null +++ b/sci-chemistry/apbs/files/apbs-examples-gentoo.patch @@ -0,0 +1,30 @@ +diff -Naur apbs-0.4.0/examples/born/runme apbs-0.4.0-new/examples/born/runme +--- apbs-0.4.0/examples/born/runme 2002-08-13 14:35:41.000000000 +0000 ++++ apbs-0.4.0-new/examples/born/runme 2006-03-09 03:15:09.000000000 +0000 +@@ -8,5 +8,5 @@ + echo "Generating ion with $i radius..." + echo "ATOM 1 I ION 1 0.000 0.000 0.000 1.00 $i" \ + > ion.pqr +- ${bindir}/apbs apbs.in > OUTPUT-${i} 2>&1 ++ /usr/bin/apbs apbs.in > OUTPUT-${i} 2>&1 + done +diff -Naur apbs-0.4.0/examples/ion-pmf/runme apbs-0.4.0-new/examples/ion-pmf/runme +--- apbs-0.4.0/examples/ion-pmf/runme 2002-08-13 14:35:41.000000000 +0000 ++++ apbs-0.4.0-new/examples/ion-pmf/runme 2006-03-09 03:16:11.000000000 +0000 +@@ -14,5 +14,5 @@ + echo "ATOM 1 I ION 1 $i 0.000 0.000 1.00 2.00"\ + > mol2.pqr + cat mol1.pqr mol2.pqr > complex.pqr +- ${bindir}/apbs apbs.in > OUTPUT_${i} 2>&1 ++ /usr/bin/apbs apbs.in > OUTPUT_${i} 2>&1 + done +diff -Naur apbs-0.4.0/examples/point-pmf/runme.sh apbs-0.4.0-new/examples/point-pmf/runme.sh +--- apbs-0.4.0/examples/point-pmf/runme.sh 2004-02-12 17:14:02.000000000 +0000 ++++ apbs-0.4.0-new/examples/point-pmf/runme.sh 2006-03-09 03:17:11.000000000 +0000 +@@ -20,5 +20,5 @@ + echo "ATOM 1 I ION 1 $i 0.000 0.000 1.00 0.00"\ + > mol2.pqr + cat mol1.pqr mol2.pqr > complex.pqr +- ${bindir}/apbs apbs.in > OUTPUT_${i} 2>&1 ++ /usr/bin/apbs apbs.in > OUTPUT_${i} 2>&1 + done |