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authorMichael Sterrett <mr_bones_@gentoo.org>2007-07-13 05:48:10 +0000
committerMichael Sterrett <mr_bones_@gentoo.org>2007-07-13 05:48:10 +0000
commit8380554d4688642e0ea9e67659823a0347ac8f52 (patch)
tree2045834c7a597608589522870d96083251b7e5cd /sci-chemistry
parentwhitespace (diff)
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(Portage version: 2.1.2.9)
Diffstat (limited to 'sci-chemistry')
-rw-r--r--sci-chemistry/babel/babel-1.6.ebuild3
-rw-r--r--sci-chemistry/elem/elem-1.0.3-r1.ebuild3
-rw-r--r--sci-chemistry/gamess/gamess-20060907.4.ebuild3
-rw-r--r--sci-chemistry/gamess/gamess-20070324.1.ebuild3
-rw-r--r--sci-chemistry/ghemical/ghemical-2.10.ebuild4
-rw-r--r--sci-chemistry/gtk-gamess/gtk-gamess-2.00.ebuild3
-rw-r--r--sci-chemistry/kemistry/kemistry-0.7.ebuild3
-rw-r--r--sci-chemistry/mpqc/mpqc-2.3.1-r1.ebuild11
-rw-r--r--sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild4
-rw-r--r--sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild4
-rw-r--r--sci-chemistry/pynmr/pynmr-0.37f.ebuild4
-rw-r--r--sci-chemistry/rasmol/rasmol-2.7.2.1.1-r1.ebuild3
-rw-r--r--sci-chemistry/raster3d/raster3d-2.7c.ebuild3
-rw-r--r--sci-chemistry/vmd/vmd-1.8.5.ebuild6
-rw-r--r--sci-chemistry/vmd/vmd-1.8.6.ebuild6
15 files changed, 15 insertions, 48 deletions
diff --git a/sci-chemistry/babel/babel-1.6.ebuild b/sci-chemistry/babel/babel-1.6.ebuild
index d5fcf2492234..c5b00a140629 100644
--- a/sci-chemistry/babel/babel-1.6.ebuild
+++ b/sci-chemistry/babel/babel-1.6.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/babel/babel-1.6.ebuild,v 1.3 2007/04/28 16:43:58 swegener Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/babel/babel-1.6.ebuild,v 1.4 2007/07/13 05:48:10 mr_bones_ Exp $
inherit eutils
@@ -45,4 +45,3 @@ src_install () {
dodoc README.1ST
}
-
diff --git a/sci-chemistry/elem/elem-1.0.3-r1.ebuild b/sci-chemistry/elem/elem-1.0.3-r1.ebuild
index 5b714f6eeb07..9ff3e0ded10e 100644
--- a/sci-chemistry/elem/elem-1.0.3-r1.ebuild
+++ b/sci-chemistry/elem/elem-1.0.3-r1.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2006 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/elem/elem-1.0.3-r1.ebuild,v 1.5 2006/10/05 21:13:41 gustavoz Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/elem/elem-1.0.3-r1.ebuild,v 1.6 2007/07/13 05:48:10 mr_bones_ Exp $
inherit toolchain-funcs
@@ -29,4 +29,3 @@ src_install () {
dobin elem elem-de elem-en
dohtml -r doc/*
}
-
diff --git a/sci-chemistry/gamess/gamess-20060907.4.ebuild b/sci-chemistry/gamess/gamess-20060907.4.ebuild
index 67e5702a2a2b..d88ebc6b32c1 100644
--- a/sci-chemistry/gamess/gamess-20060907.4.ebuild
+++ b/sci-chemistry/gamess/gamess-20060907.4.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2006 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gamess/gamess-20060907.4.ebuild,v 1.2 2007/06/26 02:39:48 mr_bones_ Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gamess/gamess-20060907.4.ebuild,v 1.3 2007/07/13 05:48:10 mr_bones_ Exp $
inherit eutils toolchain-funcs fortran flag-o-matic
@@ -111,7 +111,6 @@ src_unpack() {
-e "s/gentoo-g77/${FORTRANC}/" \
-i ddi/compddi || die "Failed setting up compddi script"
-
# fix up the checker scripts for gamess tests
sed -e "s:set GMSPATH:#set GMSPATH:g" \
-e "s:\$GMSPATH/tools/checktst:.:g" \
diff --git a/sci-chemistry/gamess/gamess-20070324.1.ebuild b/sci-chemistry/gamess/gamess-20070324.1.ebuild
index 041cb37f18af..68c4d3d38e55 100644
--- a/sci-chemistry/gamess/gamess-20070324.1.ebuild
+++ b/sci-chemistry/gamess/gamess-20070324.1.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gamess/gamess-20070324.1.ebuild,v 1.3 2007/07/03 17:40:16 opfer Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gamess/gamess-20070324.1.ebuild,v 1.4 2007/07/13 05:48:10 mr_bones_ Exp $
inherit eutils toolchain-funcs fortran flag-o-matic
@@ -111,7 +111,6 @@ src_unpack() {
-e "s/gentoo-g77/${FORTRANC}/" \
-i ddi/compddi || die "Failed setting up compddi script"
-
# fix up the checker scripts for gamess tests
sed -e "s:set GMSPATH:#set GMSPATH:g" \
-e "s:\$GMSPATH/tools/checktst:.:g" \
diff --git a/sci-chemistry/ghemical/ghemical-2.10.ebuild b/sci-chemistry/ghemical/ghemical-2.10.ebuild
index 1999b9be135f..48acbe4f64e8 100644
--- a/sci-chemistry/ghemical/ghemical-2.10.ebuild
+++ b/sci-chemistry/ghemical/ghemical-2.10.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ghemical/ghemical-2.10.ebuild,v 1.1 2007/01/18 15:06:03 je_fro Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ghemical/ghemical-2.10.ebuild,v 1.2 2007/07/13 05:48:10 mr_bones_ Exp $
inherit eutils flag-o-matic
@@ -39,7 +39,6 @@ RDEPEND="virtual/glut
DEPEND="${RDEPEND}
>=dev-util/pkgconfig-0.15"
-
src_compile() {
# With amd64, if you want gamess I recommend adding gamess and gtk-gamess to package.provided for now.
@@ -69,4 +68,3 @@ src_install() {
make DESTDIR="${D}" install || die "install failed"
}
-
diff --git a/sci-chemistry/gtk-gamess/gtk-gamess-2.00.ebuild b/sci-chemistry/gtk-gamess/gtk-gamess-2.00.ebuild
index 218e85728c95..8c8797db475e 100644
--- a/sci-chemistry/gtk-gamess/gtk-gamess-2.00.ebuild
+++ b/sci-chemistry/gtk-gamess/gtk-gamess-2.00.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gtk-gamess/gtk-gamess-2.00.ebuild,v 1.2 2007/07/03 17:47:36 opfer Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gtk-gamess/gtk-gamess-2.00.ebuild,v 1.3 2007/07/13 05:48:10 mr_bones_ Exp $
DESCRIPTION="GTK-GAMESS is a graphical frontend for GAMESS, a General Atomic and Molecular Electronic Structure System"
HOMEPAGE="http://sourceforge.net/projects/gtk-gamess/"
@@ -24,4 +24,3 @@ src_install() {
make DESTDIR="${D}" install || die "install failed"
dodoc README
}
-
diff --git a/sci-chemistry/kemistry/kemistry-0.7.ebuild b/sci-chemistry/kemistry/kemistry-0.7.ebuild
index 9a8949668aa9..9486342d25e0 100644
--- a/sci-chemistry/kemistry/kemistry-0.7.ebuild
+++ b/sci-chemistry/kemistry/kemistry-0.7.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2006 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/kemistry/kemistry-0.7.ebuild,v 1.5 2006/07/09 18:51:05 markusle Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/kemistry/kemistry-0.7.ebuild,v 1.6 2007/07/13 05:48:10 mr_bones_ Exp $
ARTS_REQUIRED="yes"
inherit kde eutils
@@ -26,4 +26,3 @@ src_unpack() {
epatch ${FILESDIR}/${P}-fPIC.patch
fi
}
-
diff --git a/sci-chemistry/mpqc/mpqc-2.3.1-r1.ebuild b/sci-chemistry/mpqc/mpqc-2.3.1-r1.ebuild
index 6d3024525f80..f40d47a4580d 100644
--- a/sci-chemistry/mpqc/mpqc-2.3.1-r1.ebuild
+++ b/sci-chemistry/mpqc/mpqc-2.3.1-r1.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2006 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mpqc/mpqc-2.3.1-r1.ebuild,v 1.6 2007/06/26 02:40:33 mr_bones_ Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mpqc/mpqc-2.3.1-r1.ebuild,v 1.7 2007/07/13 05:48:10 mr_bones_ Exp $
inherit fortran
@@ -38,7 +38,6 @@ src_unpack() {
fi
}
-
src_compile() {
# Only shared will work on ppc64 - bug #62124
# But we always want shared libraries
@@ -54,7 +53,6 @@ src_compile() {
emake || die "emake failed"
}
-
src_test() {
cd "${S}"/src/bin/mpqc/validate
@@ -64,8 +62,6 @@ src_test() {
make check0 || die "failed in test routines"
}
-
-
src_install() {
make installroot="${D}" install install_devel install_inc \
|| die "install failed"
@@ -93,8 +89,3 @@ pkg_postinst() {
einfo "consistent basis sets."
echo
}
-
-
-
-
-
diff --git a/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild b/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild
index 4e293093dc4e..c8c5d1e9cf61 100644
--- a/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild
+++ b/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild,v 1.6 2007/06/26 02:40:55 mr_bones_ Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild,v 1.7 2007/07/13 05:48:10 mr_bones_ Exp $
inherit eutils fortran multilib flag-o-matic distutils
@@ -68,9 +68,7 @@ EOF
exeinto /usr/bin
doexe ${T}/${PN} || die "Failed to install pdb2pqr wrapper."
-
dodoc ChangeLog NEWS README AUTHORS || \
die "Failed to install docs"
dohtml -r doc/* || die "Failed to install html docs."
}
-
diff --git a/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild b/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild
index 2b6205163702..94794e5604bf 100644
--- a/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild
+++ b/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild,v 1.2 2007/06/26 02:40:55 mr_bones_ Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild,v 1.3 2007/07/13 05:48:10 mr_bones_ Exp $
inherit eutils fortran multilib flag-o-matic distutils
@@ -60,9 +60,7 @@ EOF
exeinto /usr/bin
doexe ${T}/${PN} || die "Failed to install pdb2pqr wrapper."
-
dodoc ChangeLog NEWS README AUTHORS || \
die "Failed to install docs"
dohtml -r doc/* || die "Failed to install html docs."
}
-
diff --git a/sci-chemistry/pynmr/pynmr-0.37f.ebuild b/sci-chemistry/pynmr/pynmr-0.37f.ebuild
index 17b5b6c343b3..13bef3ccf9cb 100644
--- a/sci-chemistry/pynmr/pynmr-0.37f.ebuild
+++ b/sci-chemistry/pynmr/pynmr-0.37f.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2006 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pynmr/pynmr-0.37f.ebuild,v 1.2 2006/05/10 19:28:20 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pynmr/pynmr-0.37f.ebuild,v 1.3 2007/07/13 05:48:10 mr_bones_ Exp $
inherit distutils
@@ -15,8 +15,6 @@ KEYWORDS="~x86"
DEPEND="<sci-chemistry/pymol-0.99"
-
src_install() {
distutils_src_install
}
-
diff --git a/sci-chemistry/rasmol/rasmol-2.7.2.1.1-r1.ebuild b/sci-chemistry/rasmol/rasmol-2.7.2.1.1-r1.ebuild
index c5a79c20d6b8..51515cb1d148 100644
--- a/sci-chemistry/rasmol/rasmol-2.7.2.1.1-r1.ebuild
+++ b/sci-chemistry/rasmol/rasmol-2.7.2.1.1-r1.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2006 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/rasmol/rasmol-2.7.2.1.1-r1.ebuild,v 1.4 2006/07/09 07:14:07 dberkholz Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/rasmol/rasmol-2.7.2.1.1-r1.ebuild,v 1.5 2007/07/13 05:48:10 mr_bones_ Exp $
inherit toolchain-funcs
@@ -15,7 +15,6 @@ SLOT="0"
KEYWORDS="~amd64 ppc x86"
IUSE=""
-
RDEPEND="|| ( ( x11-libs/libXext
x11-libs/libXi
|| ( x11-apps/xdpyinfo x11-apps/xwininfo )
diff --git a/sci-chemistry/raster3d/raster3d-2.7c.ebuild b/sci-chemistry/raster3d/raster3d-2.7c.ebuild
index 0167363ae534..cf400454cb59 100644
--- a/sci-chemistry/raster3d/raster3d-2.7c.ebuild
+++ b/sci-chemistry/raster3d/raster3d-2.7c.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2006 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/raster3d/raster3d-2.7c.ebuild,v 1.6 2006/08/07 03:43:59 dberkholz Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/raster3d/raster3d-2.7c.ebuild,v 1.7 2007/07/13 05:48:10 mr_bones_ Exp $
inherit toolchain-funcs fortran
@@ -29,7 +29,6 @@ src_unpack() {
epatch "${FILESDIR}"/raster3d-gcc-4.1-gentoo.patch
}
-
src_compile() {
cd "${S}"
diff --git a/sci-chemistry/vmd/vmd-1.8.5.ebuild b/sci-chemistry/vmd/vmd-1.8.5.ebuild
index 631dddc571dc..f5529e62ae37 100644
--- a/sci-chemistry/vmd/vmd-1.8.5.ebuild
+++ b/sci-chemistry/vmd/vmd-1.8.5.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.5.ebuild,v 1.7 2007/06/26 02:41:20 mr_bones_ Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.5.ebuild,v 1.8 2007/07/13 05:48:10 mr_bones_ Exp $
inherit eutils toolchain-funcs python
@@ -26,7 +26,6 @@ DEPEND="app-shells/tcsh
sci-libs/netcdf
hardened? ( sys-apps/paxctl )"
-
VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD"
pkg_nofetch() {
@@ -65,13 +64,11 @@ src_unpack() {
-e "s:gentoo-libdir:${D}/usr/$(get_libdir):" \
-i configure || die "failed to adjust install paths"
-
sed -e "s:gentoo-gcc:$(tc-getCC):" \
-e "s:gentoo-g++:$(tc-getCXX):" \
-e "s:gentoo-cflags:${CFLAGS}:" \
-i configure || die "Failed to adjust C compiler/flags"
-
sed -e "s:gentoo-plugindir:${WORKDIR}/plugins:" \
-i configure || die "Failed to set up linking to plugin files"
@@ -151,4 +148,3 @@ src_install() {
/sbin/paxctl -pemrxs ${D}/usr/$(get_libdir)/${PN}/${PN}_LINUX
fi
}
-
diff --git a/sci-chemistry/vmd/vmd-1.8.6.ebuild b/sci-chemistry/vmd/vmd-1.8.6.ebuild
index 07337a662a48..287a6dc8ed18 100644
--- a/sci-chemistry/vmd/vmd-1.8.6.ebuild
+++ b/sci-chemistry/vmd/vmd-1.8.6.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.6.ebuild,v 1.2 2007/06/26 02:41:20 mr_bones_ Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.6.ebuild,v 1.3 2007/07/13 05:48:10 mr_bones_ Exp $
inherit eutils toolchain-funcs python
@@ -25,7 +25,6 @@ DEPEND="app-shells/tcsh
sci-biology/stride
sci-libs/netcdf"
-
VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD"
pkg_nofetch() {
@@ -64,13 +63,11 @@ src_unpack() {
-e "s:gentoo-libdir:${D}/usr/$(get_libdir):" \
-i configure || die "failed to adjust install paths"
-
sed -e "s:gentoo-gcc:$(tc-getCC):" \
-e "s:gentoo-g++:$(tc-getCXX):" \
-e "s:gentoo-cflags:${CFLAGS}:" \
-i configure || die "Failed to adjust C compiler/flags"
-
sed -e "s:gentoo-plugindir:${WORKDIR}/plugins:" \
-i configure || die "Failed to set up linking to plugin files"
@@ -145,4 +142,3 @@ src_install() {
sed -e "s:${D}::" -i "${D}"/usr/bin/${PN} \
|| die "failed to set up vmd wrapper script"
}
-