sci-chemistry/pdb-tools: Move to new python eclass

(Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)

3 files changed, 79 insertions, 9 deletions

diff --git a/sci-chemistry/pdb-tools/ChangeLog b/sci-chemistry/pdb-tools/ChangeLog
index 757fe8c0c3b9..bf641223c83c 100644
--- a/sci-chemistry/pdb-tools/ChangeLog
+++ b/sci-chemistry/pdb-tools/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/pdb-tools
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v 1.8 2012/10/19 10:11:54 jlec Exp $
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v 1.9 2013/04/16 08:41:10 jlec Exp $
+
+*pdb-tools-0.1.4-r4 (16 Apr 2013)
+
+  16 Apr 2013; Justin Lecher <jlec@gentoo.org> +pdb-tools-0.1.4-r4.ebuild,
+  metadata.xml:
+  Move to new python eclass
 
   19 Oct 2012; Justin Lecher <jlec@gentoo.org> pdb-tools-0.1.4-r3.ebuild:
   Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
diff --git a/sci-chemistry/pdb-tools/metadata.xml b/sci-chemistry/pdb-tools/metadata.xml
index 7671091aa280..13e9a3c93979 100644
--- a/sci-chemistry/pdb-tools/metadata.xml
+++ b/sci-chemistry/pdb-tools/metadata.xml
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-	<herd>sci-chemistry</herd>
-	<maintainer>
-		<email>jlec@gentoo.org</email>
-	</maintainer>
-	<upstream>
-		<remote-id type="google-code">pdb-tools</remote-id>
-	</upstream>
+  <herd>sci-chemistry</herd>
+  <maintainer>
+    <email>jlec@gentoo.org</email>
+  </maintainer>
+  <upstream>
+    <remote-id type="google-code">pdb-tools</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild b/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild
new file mode 100644
index 000000000000..67ab5082e64e
--- /dev/null
+++ b/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild
@@ -0,0 +1,64 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r4.ebuild,v 1.1 2013/04/16 08:41:10 jlec Exp $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} pypy{1_8,1_9} )
+
+inherit fortran-2 python-r1 toolchain-funcs
+
+DESCRIPTION="Tools for manipulating and doing calculations on wwPDB macromolecule structure files"
+HOMEPAGE="http://code.google.com/p/pdb-tools/"
+SRC_URI="http://${PN}.googlecode.com/files/${PN}_${PV}.tar.gz"
+
+SLOT="0"
+LICENSE="GPL-3"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND="sci-chemistry/dssp"
+DEPEND=""
+
+S="${WORKDIR}"/${PN}_${PV}
+
+src_prepare() {
+	sed \
+		-e "s:script_dir,\"pdb_data\":\"${EPREFIX}/usr/share/${PN}\",\"pdb_data\":g" \
+		-i pdb_sasa.py || die
+	sed \
+		-e "/satk_path =/s:^.*$:satk_path = \"${EPREFIX}/usr/bin\":g" \
+		-i pdb_satk.py || die
+}
+
+src_compile() {
+	mkdir bin
+	cd satk
+	for i in *.f; do
+		einfo "$(tc-getFC) ${FFLAGS} ${LDFLAGS} ${i} -o ${i/.f}"
+		$(tc-getFC) ${FFLAGS} -c ${i} -o ${i/.f/.o} || die
+		$(tc-getFC) ${LDFLAGS} -o ../bin/${i/.f} ${i/.f/.o} || die
+		sed \
+			-e "s:${i/.f}.out:${i/.f}:g" \
+			-i ../pdb_satk.py || die
+	done
+}
+
+src_install() {
+	local script
+	insinto /usr/share/${PN}
+	doins -r pdb_data/peptides
+	rm -rf pdb_data/peptides || die
+
+	for script in pdb_*.py; do
+		python_foreach_impl python_newscript ${script} ${script%.py}
+	done
+
+	python_foreach_impl python_domodule helper pdb_data
+
+	python_moduleinto ${PN}
+	python_foreach_impl python_domodule *.py
+
+	dobin bin/*
+	dodoc README
+}