sci-chemistry/refmac: Drop old, fixes build problem with stable gcc, #454290

(Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)

2 files changed, 4 insertions, 82 deletions

diff --git a/sci-chemistry/refmac/ChangeLog b/sci-chemistry/refmac/ChangeLog
index 11faa21c7da9..b02bcf38b817 100644
--- a/sci-chemistry/refmac/ChangeLog
+++ b/sci-chemistry/refmac/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-chemistry/refmac
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.54 2013/02/03 17:56:16 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.55 2013/02/03 18:24:15 jlec Exp $
+
+  03 Feb 2013; Justin Lecher <jlec@gentoo.org> -refmac-5.5.0110-r2.ebuild:
+  Drop old, fixes build problem with stable gcc, #454290
 
   03 Feb 2013; Agostino Sarubbo <ago@gentoo.org> refmac-5.5.0110-r3.ebuild:
   Stable for ppc, wrt bug #454310
diff --git a/sci-chemistry/refmac/refmac-5.5.0110-r2.ebuild b/sci-chemistry/refmac/refmac-5.5.0110-r2.ebuild
deleted file mode 100644
index 8d7d0f0127c8..000000000000
--- a/sci-chemistry/refmac/refmac-5.5.0110-r2.ebuild
+++ /dev/null
@@ -1,81 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.5.0110-r2.ebuild,v 1.14 2012/10/19 10:25:51 jlec Exp $
-
-EAPI=2
-
-inherit base fortran-2 flag-o-matic toolchain-funcs versionator
-
-DESCRIPTION="Macromolecular crystallographic refinement program"
-HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac"
-SRC_URI="
-	${HOMEPAGE}/data/refmac_stable/refmac_${PV}.tar.gz
-	test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )"
-
-SLOT="0"
-LICENSE="ccp4"
-KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-
-RDEPEND="
-	sci-chemistry/makecif
-	>=sci-libs/ccp4-libs-6.1.3-r7
-	sci-libs/mmdb
-	<sci-libs/monomer-db-1
-	virtual/blas
-	virtual/lapack"
-DEPEND="${RDEPEND}"
-
-FORTRAN_STANDARD="77 90"
-
-S="${WORKDIR}"
-
-PATCHES=(
-	"${FILESDIR}"/${PV}-allow-dynamic-linking.patch
-	)
-
-src_prepare() {
-	base_src_prepare
-	use test && epatch "${FILESDIR}"/$(get_version_component_range 1-2 ${PV})-test.log.patch
-	[[ ${FC} == *gfortran* ]] && \
-		append-fflags -fno-second-underscore && \
-		append-cflags -DGFORTRAN -DPROTOTYPE && \
-		append-libs -lgfortran -lgfortranbegin -lstdc++
-	[[ ${FC} == *ifort* ]] && \
-		append-libs -lstdc++
-}
-
-src_compile() {
-	emake \
-		FC=$(tc-getFC) \
-		CC=$(tc-getCC) \
-		CXX=$(tc-getCXX) \
-		COPTIM="${CFLAGS}" \
-		FOPTIM="${FFLAGS:- -O2}" \
-		VERSION="" \
-		XFFLAGS="" \
-		XCFLAGS="" \
-		LLIBCCP="-lccp4f -lccp4c -lccif $(pkg-config --libs mmdb)" \
-		LLIBLAPACK="$(pkg-config --libs lapack blas)" \
-		LLIBOTHERS="${LIBS}" \
-		${PN} libcheck || die
-}
-
-src_test() {
-	einfo "Starting tests ..."
-	source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh"
-	export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}"
-	export CCP4_TEST="${WORKDIR}"/test-framework
-	export CCP4_SCR="${T}"
-	ln -sf refmac "${S}"/refmac5
-	sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb
-	ccp4-run-thorough-tests -v test_refmac5 || die
-}
-
-src_install() {
-	exeinto /usr/libexec/ccp4/bin/
-	doexe ${PN} || die
-	dosym ../libexec/ccp4/bin/${PN} /usr/bin/${PN}
-	dosym refmac /usr/bin/refmac5 || die
-	dodoc refmac_keywords.pdf bugs_and_features.pdf || die
-}