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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-12-21 17:05:50 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-12-21 17:05:50 +0000 |
| commit | c28298f052162a093a4d214827afaca2d9e9e586 (patch) | |
| tree | c51d1f8aee6fbdc3c010c81b22c166b12388e1ef /sci-biology | |
| parent | Old. (diff) | |
| download | gentoo-2-c28298f052162a093a4d214827afaca2d9e9e586.tar.gz gentoo-2-c28298f052162a093a4d214827afaca2d9e9e586.tar.bz2 gentoo-2-c28298f052162a093a4d214827afaca2d9e9e586.zip | |
Version bump, import from Science overlay
(Portage version: 2.2_rc86/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/samtools/ChangeLog | 16 | ||||
| -rw-r--r-- | sci-biology/samtools/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/samtools/samtools-0.1.12.ebuild | 34 |
3 files changed, 59 insertions, 0 deletions
diff --git a/sci-biology/samtools/ChangeLog b/sci-biology/samtools/ChangeLog new file mode 100644 index 000000000000..2cff1cfd087f --- /dev/null +++ b/sci-biology/samtools/ChangeLog @@ -0,0 +1,16 @@ +# ChangeLog for sci-biology/samtools +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.1 2010/12/21 17:05:50 weaver Exp $ + +*samtools-0.1.12 (21 Dec 2010) + + 21 Dec 2010; Andrey Kislyuk <weaver@gentoo.org> +samtools-0.1.12.ebuild, + +metadata.xml: + Version bump, import from Science overlay + + 22 Jan 2010; root <root@onyx.(none)> + Version bump + + 26 Feb 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog: + New package, ebuild written by me + diff --git a/sci-biology/samtools/metadata.xml b/sci-biology/samtools/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/samtools/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/samtools/samtools-0.1.12.ebuild b/sci-biology/samtools/samtools-0.1.12.ebuild new file mode 100644 index 000000000000..632208936242 --- /dev/null +++ b/sci-biology/samtools/samtools-0.1.12.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-0.1.12.ebuild,v 1.1 2010/12/21 17:05:50 weaver Exp $ + +EAPI="2" + +MY_P="${P}a" + +DESCRIPTION="Utilities for SAM (Sequence Alignment/Map), a format for large nucleotide sequence alignments" +HOMEPAGE="http://${PN}.sourceforge.net/" +SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.bz2" + +LICENSE="MIT" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="" + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + sed -i 's/^CFLAGS=/CFLAGS+=/' "${S}"/{Makefile,misc/Makefile} +} + +src_install() { + dobin samtools || die + dobin $(find misc -type f -executable) || die + insinto /usr/share/${PN} + doins -r examples || die + doman ${PN}.1 || die + dodoc AUTHORS ChangeLog NEWS +} |