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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-04-13 01:06:44 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-04-13 01:06:44 +0000 |
| commit | 93c45ec6f0084c94c420d35825da7aae1385010a (patch) | |
| tree | 6119bf198499c5fa550bbcb1e1c4e13b1aa5a1bd /sci-biology | |
| parent | whitespace (diff) | |
| download | gentoo-2-93c45ec6f0084c94c420d35825da7aae1385010a.tar.gz gentoo-2-93c45ec6f0084c94c420d35825da7aae1385010a.tar.bz2 gentoo-2-93c45ec6f0084c94c420d35825da7aae1385010a.zip | |
Import from Science overlay
(Portage version: 2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/dotur/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/dotur/dotur-1.53.ebuild | 31 | ||||
| -rw-r--r-- | sci-biology/dotur/metadata.xml | 9 |
3 files changed, 50 insertions, 0 deletions
diff --git a/sci-biology/dotur/ChangeLog b/sci-biology/dotur/ChangeLog new file mode 100644 index 000000000000..d35e0577edfe --- /dev/null +++ b/sci-biology/dotur/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/dotur +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/dotur/ChangeLog,v 1.1 2009/04/13 01:06:44 weaver Exp $ + + 12 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> +ChangeLog, +Manifest: + Import from Science overlay + + 04 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog: + New package, ebuild written by me + diff --git a/sci-biology/dotur/dotur-1.53.ebuild b/sci-biology/dotur/dotur-1.53.ebuild new file mode 100644 index 000000000000..4ece9454946e --- /dev/null +++ b/sci-biology/dotur/dotur-1.53.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/dotur/dotur-1.53.ebuild,v 1.1 2009/04/13 01:06:44 weaver Exp $ + +EAPI=2 + +inherit toolchain-funcs + +DESCRIPTION="Distance Based OTU and Richness Determination for DNA sequences" +HOMEPAGE="http://schloss.micro.umass.edu/software/dotur.html" +SRC_URI="http://schloss.micro.umass.edu/software/${PN}/${P}.tgz" + +LICENSE="as-is" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/DOTUR-${PV}" + +src_compile() { + sed -i '1 i #include <string.h>\n#include <algorithm>' dotur.C + $(tc-getCXX) ${CXXFLAGS} -O3 dotur.C -o dotur || die +} + +src_install() { + dobin dotur || die + dodoc README +} diff --git a/sci-biology/dotur/metadata.xml b/sci-biology/dotur/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/dotur/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> |