Initial import

(Portage version: 2.0.51-r15)

5 files changed, 67 insertions, 0 deletions

diff --git a/sci-biology/trnascan-se/ChangeLog b/sci-biology/trnascan-se/ChangeLog
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+++ b/sci-biology/trnascan-se/ChangeLog
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+# ChangeLog for sci-biology/trnascan-se
+# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/ChangeLog,v 1.1 2005/01/30 18:25:40 ribosome Exp $
+
+*trnascan-se-1.23 (30 Jan 2005)
+
+  30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +trnascan-se-1.23.ebuild:
+  Initial import.
+
diff --git a/sci-biology/trnascan-se/Manifest b/sci-biology/trnascan-se/Manifest
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index 000000000000..3271641ac450
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+++ b/sci-biology/trnascan-se/Manifest
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+MD5 52a2d8486100b689ebdaca388a8a4521 trnascan-se-1.23.ebuild 891
+MD5 8b2911939b7a9ffbd6a01f82973f0c7a metadata.xml 587
+MD5 9ecd6913936da62c55e691e4123d3f4f files/digest-trnascan-se-1.23 69
diff --git a/sci-biology/trnascan-se/files/digest-trnascan-se-1.23 b/sci-biology/trnascan-se/files/digest-trnascan-se-1.23
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index 000000000000..8079b6849520
--- /dev/null
+++ b/sci-biology/trnascan-se/files/digest-trnascan-se-1.23
@@ -0,0 +1 @@
+MD5 f993cea7fce0e68641360b1799640316 trnascan-se-1.23.tar.bz2 482202
diff --git a/sci-biology/trnascan-se/metadata.xml b/sci-biology/trnascan-se/metadata.xml
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index 000000000000..b5716d9ff73d
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+++ b/sci-biology/trnascan-se/metadata.xml
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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>ribosome@gentoo.org</email>
+		<name>Olivier Fisette</name>
+	</maintainer>
+	<herd>sci</herd>
+	<longdescription>
+		tRNAscan-SE detects ~99% of eukaryotic nuclear or prokaryotic tRNA
+		genes, with a false positive rate of less than one per 15 gigabases,
+		and with a search speed of about 30 kb/second. It was implemented for
+		large-scale human genome sequence analysis, but is applicable to
+		other DNAs as well.
+	</longdescription>
+</pkgmetadata>
diff --git a/sci-biology/trnascan-se/trnascan-se-1.23.ebuild b/sci-biology/trnascan-se/trnascan-se-1.23.ebuild
new file mode 100644
index 000000000000..6383d30c6f5f
--- /dev/null
+++ b/sci-biology/trnascan-se/trnascan-se-1.23.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/trnascan-se-1.23.ebuild,v 1.1 2005/01/30 18:25:40 ribosome Exp $
+
+inherit toolchain-funcs
+
+DESCRIPTION="tRNA detection in large-scale genome sequences"
+HOMEPAGE="http://selab.wustl.edu/cgi-bin/selab.pl?mode=software%22#trnascan"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="GPL-2"
+
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+
+DEPEND="dev-lang/perl"
+
+src_compile() {
+	sed -i -e "s%BINDIR  = \$(HOME)/bin%BINDIR  = ${D}/usr/bin%" \
+	-e "s%LIBDIR  = \$(HOME)/lib/tRNAscan-SE%LIBDIR  = ${D}/usr/share/${PN}%" \
+	-e "s%MANDIR  = \$(HOME)/man%MANDIR  = ${D}/usr/share/man%" \
+	-e "s%CC = gcc%CC = $(tc-getCC)%" \
+	-e "s%CFLAGS = -O%CFLAGS = ${CFLAGS}%" \
+	Makefile || die
+	emake || die
+}
+
+src_install() {
+	make install || die
+	dodoc MANUAL README Release.history
+	insinto /usr/share/doc/${PF}
+	doins Manual.ps
+}
+
+src_test() {
+	make testrun || die
+}