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authorJustin Lecher <jlec@gentoo.org>2012-07-15 10:26:02 +0000
committerJustin Lecher <jlec@gentoo.org>2012-07-15 10:26:02 +0000
commit045c0dbbc4992f1d440db395bc40b6bbfca95cd3 (patch)
tree8a592afda8b0cb0a859573d659d7ae35a6449b99 /sci-biology/infernal
parentapp-doc/root-docs: Cleaned old (diff)
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sci-biology/infernal: Fix cvs updates of commiter names in patches, #426588
(Portage version: 2.2.0_alpha118/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/infernal')
-rw-r--r--sci-biology/infernal/ChangeLog6
-rw-r--r--sci-biology/infernal/files/infernal-1.0.2-perl-5.16.patch18
2 files changed, 16 insertions, 8 deletions
diff --git a/sci-biology/infernal/ChangeLog b/sci-biology/infernal/ChangeLog
index 38728de4a063..4ef63a5cf65e 100644
--- a/sci-biology/infernal/ChangeLog
+++ b/sci-biology/infernal/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/infernal
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/infernal/ChangeLog,v 1.11 2012/06/25 07:08:17 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/infernal/ChangeLog,v 1.12 2012/07/15 10:26:02 jlec Exp $
+
+ 15 Jul 2012; Justin Lecher <jlec@gentoo.org>
+ files/infernal-1.0.2-perl-5.16.patch:
+ Fix cvs updates of commiter names in patches, #426588
25 Jun 2012; Justin Lecher <jlec@gentoo.org> infernal-1.0.2-r1.ebuild,
+files/infernal-1.0.2-perl-5.16.patch:
diff --git a/sci-biology/infernal/files/infernal-1.0.2-perl-5.16.patch b/sci-biology/infernal/files/infernal-1.0.2-perl-5.16.patch
index b4eeab3ca59d..9a06ee88d8d1 100644
--- a/sci-biology/infernal/files/infernal-1.0.2-perl-5.16.patch
+++ b/sci-biology/infernal/files/infernal-1.0.2-perl-5.16.patch
@@ -50,7 +50,7 @@ index a4dc126..b61fa7a 100755
+++ b/easel/devkit/esl-dependencies
@@ -13,8 +13,8 @@
# SRE, Mon Jun 11 11:15:31 2007
- # SVN $Id: infernal-1.0.2-perl-5.16.patch,v 1.1 2012/06/25 07:08:17 jlec Exp $
+ # SVN $Id: infernal-1.0.2-perl-5.16.patch,v 1.2 2012/07/15 10:26:02 jlec Exp $
-require "getopts.pl"
-&Getopts('1afr');
@@ -65,7 +65,7 @@ index 81d03de..6201d3d 100755
+++ b/easel/devkit/sqc
@@ -176,12 +176,11 @@
# SRE, Tue Aug 6 11:16:39 2002
- # SVN $Id: infernal-1.0.2-perl-5.16.patch,v 1.1 2012/06/25 07:08:17 jlec Exp $
+ # SVN $Id: infernal-1.0.2-perl-5.16.patch,v 1.2 2012/07/15 10:26:02 jlec Exp $
-require "getopts.pl";
-require "importenv.pl";
@@ -88,13 +88,15 @@ index 81d03de..6201d3d 100755
foreach $suffix ("aa".."zz") {
$name = "$dir"."esltmp".$suffix.$$;
diff --git a/easel/testsuite/coverage_report.pl b/easel/testsuite/coverage_report.pl
-index 9c77791..024ed34 100755
+old mode 100755
+new mode 100644
+index 9c77791..024ed34
--- a/easel/testsuite/coverage_report.pl
+++ b/easel/testsuite/coverage_report.pl
@@ -16,9 +16,9 @@
#
# SRE, Thu Mar 1 19:22:57 2007 (Janelia)
- # SVN $Id: infernal-1.0.2-perl-5.16.patch,v 1.1 2012/06/25 07:08:17 jlec Exp $
+ # SVN $Id: infernal-1.0.2-perl-5.16.patch,v 1.2 2012/07/15 10:26:02 jlec Exp $
-require "getopts.pl";
+use Getopt::Std;
$have_sloccount = 1;
@@ -109,7 +111,7 @@ index d1b4a9a..db4378f 100755
+++ b/easel/testsuite/driver_report.pl
@@ -19,8 +19,8 @@
# SRE, Fri Mar 2 10:01:44 2007 (Janelia)
- # SVN $Id: infernal-1.0.2-perl-5.16.patch,v 1.1 2012/06/25 07:08:17 jlec Exp $
+ # SVN $Id: infernal-1.0.2-perl-5.16.patch,v 1.2 2012/07/15 10:26:02 jlec Exp $
-require "getopts.pl";
-&Getopts('c');
@@ -119,13 +121,15 @@ index d1b4a9a..db4378f 100755
if ($ENV{'CC'} ne "") { $CC = $ENV{'CC'}; } else { $CC = "gcc"; }
diff --git a/easel/testsuite/valgrind_report.pl b/easel/testsuite/valgrind_report.pl
-index 186a392..07026a0 100755
+old mode 100755
+new mode 100644
+index 186a392..07026a0
--- a/easel/testsuite/valgrind_report.pl
+++ b/easel/testsuite/valgrind_report.pl
@@ -10,8 +10,8 @@
#
# SRE, Fri Mar 2 08:37:48 2007 [Janelia]
- # SVN $Id: infernal-1.0.2-perl-5.16.patch,v 1.1 2012/06/25 07:08:17 jlec Exp $
+ # SVN $Id: infernal-1.0.2-perl-5.16.patch,v 1.2 2012/07/15 10:26:02 jlec Exp $
-require "getopts.pl";
-&Getopts('c');
+use Getopt::Std;