Import latest changes from science overlay, thanks Ted Tanberry for the work; fixes #504680

(Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

1 files changed, 26 insertions, 7 deletions

diff --git a/sci-biology/emboss/Manifest b/sci-biology/emboss/Manifest
index 622de573a238..c362048584fe 100644
--- a/sci-biology/emboss/Manifest
+++ b/sci-biology/emboss/Manifest
@@ -1,27 +1,46 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX 22emboss 110 SHA256 cf3bd3b8d2638a0cd14e57839033d63c855114a0e12883bbc7a5106b0cfc01ad SHA512 4ba3f49ac2dbe3cb80c39d15674d7437261341fb445c13ac46da8fb9d679948bf5883a99a0ef90bd6dc7f870547c245b61a8e0d88266af4edd260b69eb741df7 WHIRLPOOL d6cf646af57301b94c377701e19978cbe693aa10f5b9357027a1f4a63e0bab6870818c7ce9fde5d644c2c508607ff44603c1cdc9c22eb73435f3e25778f73cff
 AUX 6.3.1_p4-unbundle-libs.patch 18988 SHA256 1f6170a8f4182792d145fd21b6b23d817ea9f5ea39ba77721947ae67a6b6927d SHA512 c11383cca08adbb597c45fd0c86106fa8c051e31807e8afc2daa428f44c023efa9bde0ae093c8711b7de650144c2511e8db67c627cb02d926b1ebb4ffc56a013 WHIRLPOOL a43a09086f08ce7fda67b155720eb0776ee79dc41fc4e4894f1b3e27fa05665e5b75a16066d238f661f7fefa4944b6cb107ade6eb3d8c6700d023d7fd55276e8
 AUX README.Gentoo 1326 SHA256 33b517b977cc85824847bd6cf4113489a5554fb014f1a6b1d22d6f80c3487e9f SHA512 b8d4c96e03107a4a0f73181888950c8b71d0e2ddacaa97c2e7bbdfe3e24391ca107f960bc95cb91a809794eb2d55695654fd24e2708f477423b48535909aa670 WHIRLPOOL 216067009b1415eea119aaaa2c93c41ffa6735424683498b17791874255e833dfc478934edcd40b845f4232707e72241e3c06090e24e998f7fafda212ab214c3
+AUX README.gentoo 1522 SHA256 3cbb20ef948613f07698ab17c2b432e3aeab0ade6499a965c538d4feae8440d2 SHA512 a5441a056ebb11d24b83b8bfb9182f0753b85ec5ba126a123eb97c55fc665dadff2cc5f16c8e4314535f1b6a206c200324c0c5d5db6af109c841ee68ac76bb07 WHIRLPOOL b659d2c08416786ce4bdd0de0d61da49c1e6be4524e19c4b262a81a6455bf6b3e24ca0f1c7b5414c5fda35a006827fc5e229411821247b76bc26afda5a0a21d8
 AUX emboss-5.0.0-as-needed.patch 1751 SHA256 e57a60d911e32f1aea16c079e2fd0910a5f7ed43752ea71094d3f3b7575617d3 SHA512 a2d978ce86fc3a63dc691059c4da598ccfb958d51097bc6070204ad6062f257b3ac496b852bb2772041bda087d0732cf03c4a4868462781700705da4faff8b59 WHIRLPOOL 101b8c89052dbc24211363e4fbe45e1407a30f8046013269d360b983a677ad5e62be796baf1d1097ae30dc392dc8db789d784dad51384e9c9b8df526b475a1d6
 AUX emboss-6.3.1_p4-r1_plcol.patch 3638 SHA256 dfaf85cf5c53a42047a75b1544ca44b450f2d4219c458c243bab53166f917b64 SHA512 63feed3dc32769b1c77ee79c4fd2f7d84d3d9bc6b716bc5f8dbef9ecff441432e7c1030b4d42e2da647231a27b6a7ae094b2115730ba8de94a363644d33ee489 WHIRLPOOL 7ba010b3a3a7eb116e4b0b85734648112fd4a6d780d32bde67a459fe23385b5f73a70d69b67b6d775992227ea90fb5edba21db1e4b51624aabfe5831b590e40d
+AUX emboss-6.6.0_FORTIFY_SOURCE-fix.patch 417 SHA256 317bff2c29f321afe7274babba8db554420a26744cef6aa73885b18e7434e89f SHA512 9873504675825613c913fbd8c03d919c5d70ad7f15e3983ae9dc5ecd04e57d1086c303a4f38efd29def4f089099b24449014bbe965816c7f8b37a5d4ffa13469 WHIRLPOOL b23ea76326c732d5c25429589bed6301d0a6e9342523275a40c225c2af0e25eb2b6279905c52633b35eb3208bf43b7f4a1307c5f66bf95e81e8c8097d967d801
+AUX emboss-6.6.0_fix-build-system.patch 10976 SHA256 5ce7f95c2deaf6ce4f7ffa617f61de6c77dc05b74e420fa57e0562142215b180 SHA512 d03cc98b0dcbf997ab562007e2190c03e8dbbda4ee3d679001bbcdfb0d33afd717560e445f9a463b7b1e36bba59b4accb7318c2a38ffb2fb6283dd3482dbfbfc WHIRLPOOL cc58a4041730d48ce958c0babef2d0185df9bf1738daff88a5b62724ceca27438ea7c8370fafc309d816bf76b80b3c23d063d915dbe59e081ab794da29b38079
+AUX emboss-6.6.0_plplot-declarations.patch 1562 SHA256 d0146d519f23c0bee9c2b13cde1c8f6b4e2ae333740672623620d5236e58326d SHA512 fc27b7c1d518b5cdacf1964d56219c6574f43d18dc324e41b9dcdfd1afef17a784f2b209b62c366fb902ba57a50f438a1b328eb2118ee9463ce82b36039bc0bb WHIRLPOOL d23b7a061d1fa41c8319fd9f00168153022a70575148b6c23cd41d9fa9cf393caddb3d26a4ebcf94b66892998bd356b2ea391f448306706e364603bdbe809153
+AUX emboss-6.6.0_qa-implicit-declarations.patch 1324 SHA256 87de58d0a6225ba7f4644edd802d8c8658d59bd8140b48771da86b849e725b96 SHA512 15c303fe48a438f50f1c9a0efd7e8fcbcb4102151fc182feb8e0d74c47c3435385a1e44436cebd3c2017c97dd89b82832258748f28f3740e511a92b088f539fb WHIRLPOOL d1aeee505672c1ec596afc547052324144f4b72f397722d9e387d94c1940b30f81b8f265d9cd1ef902dea083f628ae79a3a3e5f65bb2342eb54c57fa169ca60a
 AUX emboss-README.Gentoo-1 1474 SHA256 e97558bbc8296f2e9395080061e494b282303ed69e1d6eb45554846617b47abd SHA512 92d6f567d10b6dc9188a736f502b8ab3961d6930424ed8ff3a6d21f9a8037cb94d5d20c9dce186fecd4da4b8cbc2cd842998e4d48a452abf69fc960d9bc9fd7f WHIRLPOOL 0ecc950f391c23afcdf3607ab6ef27a87b7a9b62e5ce15b3bca78166529c9dce7794cfdb181e99993326ee5b512707abfef230425a187b23b0bb8db2adb97af3
 AUX emboss-README.Gentoo-2 1516 SHA256 47f78101b0759f5c629ebee630c14871f1c579c40336a0666647680bc549914e SHA512 cc50a7c9310e57f2a3b9516d9265c47828e368b9eb13a2030c1baf85bc45d831479d3c873638fe0c208853829ed10776f4363a286f57a94852f0986a53249ef3 WHIRLPOOL b589c5407c1eb43455e7a09295a443b9b0806099e90d04545202d9d3d401b834e6f54b5063324c45ca20e2749101edc55c5128883630d582268244776f385687
 DIST EMBOSS-6.0.1.tar.gz 20204153 SHA256 3e352902aa9dab88bf486457ff23794f19398dfc6b550c4bf175dfcad34c233d
 DIST EMBOSS-6.1.0.tar.gz 21968220 SHA256 033d205c108e10e314b1ca61ec026a4a7fec2780e8781da67b0e16825b63af41
 DIST EMBOSS-6.3.1.tar.gz 23572243 SHA256 4f3290600a970c2a23a7e47f884d1fc8156ec40538f7191a6e83e23680d27a8d
+DIST EMBOSS-6.6.0.tar.gz 117962028 SHA256 7184a763d39ad96bb598bfd531628a34aa53e474db9e7cac4416c2a40ab10c6e SHA512 2d28a03381f7dc98d205aa50202fbbac02ad218fc775d86579d310296be124403623484b1907154d915f15cd32a9f8cf16ecfaa6c4a28b362e24dc8e6380b75a WHIRLPOOL 25241e865b1ad4e5459f84a2b0def7cd00a6e2904db714838dfe0533e01f8373cfdd4c78df225f9d2a77ead4cb9998791bd19f46b32e220810ad950fa288b9fe
 DIST emboss-6.3.1_p4.patch.gz 4070 SHA256 61d1b62e3148541d496103711db6526ba76488a0899af2c98264b03bf8d6e24c
 EBUILD emboss-6.0.1.ebuild 3462 SHA256 e0b2cc3fa1d46fce803a3054e5a7a37f3e8f532822fe5c4e27c5f13988f3bdfd SHA512 60f0b43ab3377791dd44553a4bbd9817fa498afa7ac1a11c334f20ae3d431aef4e35b9a1b38a572bd185ecb5cd29e69de24f13c90c36b689299bc5b2d2194932 WHIRLPOOL 2fe9a606dc570e8236898fbde67dac4b05ba19eb6c65bbfd13fefb11e6bc2e0fab19c39555cccbcdab734636b9f058f88529816e0878a3db8e40548610cceb0d
 EBUILD emboss-6.1.0-r1.ebuild 3697 SHA256 599e0cda62759ffe7eee70380f38535c3b293caeaba42e7d71e57f29dc562d05 SHA512 76e8d983d40f22932ff927b3ee4795d4fc960c8f9af51915a8015c1f2e5af8a8546025befbbe98482fbf07eb72b74259f6d3cfda9983fa2df4aee73319f38d3d WHIRLPOOL ffbc015fdae4041d27a238888e0bb432618014cf6aadbd736526d7f6d0413b72c78bca4efd991294bcd78879c289e4524906fcd1a41a5a2427dc9c537600e02b
 EBUILD emboss-6.3.1_p4-r1.ebuild 3552 SHA256 b98299dbbd7c6fe64de451eccb224935cbd36566b837ec98d672c5e0ecda5571 SHA512 f0d2eafdf5364a4a64011b1ede64e78014a41357187cd746979f12afd30de4135e43a525f856b8f43153fd85863ed306236edfb2848f849a471a8028c298668f WHIRLPOOL 7952605042b63201d5e0aececb9554c06ca8270f1abcbd6e221d59b19803e8fcc38889df0464deed16d874da4970cfb9ad505613092286d0cf2fd1f53b5933e2
 EBUILD emboss-6.3.1_p4.ebuild 3513 SHA256 adaead0663a722e32cd1e4d90117e5073a5627652495adc3204cd01b5fd92418 SHA512 0ada918e8b916fb5e58a927d100db3e2302aa6d07584f390baedd5d62dc860fe78d22456695a73a935f18d6a93954f7a3a75bf9955c51fb75b71163fcb21e2e6 WHIRLPOOL 37e9d6553116ce552d93274031e69c0445d439320c3cb75ffb5b0099e891ffd2f21024c5e36cc730bc9d727ae08521a37f5fc3d566dba1d8fd6479f90c17a915
-MISC ChangeLog 12310 SHA256 efde615e77e693431a3303e09c66f85f57d3601a711d1ffb2abfe44e0edf5d01 SHA512 8b53c46732dba18d7f8397345ceca76fc3912d0abdaed1aad44d40cf20beface776dafcf71426129b959929607c6d939ed2ff6a7775dec6a1e9a896e3c0f0ce0 WHIRLPOOL d40d6c3ddf56c68c8e2979af8f6bc983de6451dc7b0ceb972cdb56d446f68974c9f811fa69c9db3914b0e3603da89046a0f7c9c63d51774bb3dc53608bfded74
-MISC metadata.xml 924 SHA256 9a25a29f9ad98792903c439ad7dd4ec485e44e60e23beaf1fa4c209ea89be49b SHA512 1373628f4293e287705092d8d3dea2b44fed318d52d4171704f0b4199469eee45cf59f49155d12650f8081557bba4253f7266f61b5cb295c80f37fb940fd5156 WHIRLPOOL b5546eeac598092b59ca7f9734bfef77110b3ff21a541db3906e8915a1893c8d7189848ef0dd643e065b273c5034cdc441535ad1ffc21bc504c3566979a6a037
+EBUILD emboss-6.6.0.ebuild 1779 SHA256 7590f591ce76ae91a14314ff7fe906a5a7af80348516ada361d19a0e4be93e37 SHA512 2f990414a1e1c1468ca43aa70a9dd5a8c10762a5f299b8c8a292be4d855a2d296780794ad954e6fb433bf931ab243f3e1f9bfe47a51fc6b0354665a4af179ea2 WHIRLPOOL 1b10864dc65760a4e90e2aa71f2d340421fdc7c21ec235c4c1e6efcf406a789fd991906b8383588df786428b69342e6661631df2fbe802b7ffb3b3580d6f068b
+MISC ChangeLog 12732 SHA256 5f2012c51ea53e490e79afad355bcbd9e9677f02f020133261d4f19d9281ff29 SHA512 b0c5cd0dd8f2330d98cdcf848004677dc31f651f92e504843455fc9cecdf2d5e0bde4b3d4fc9415e69cd025d620b0af5a67a7595292f7557928bc185f20134e7 WHIRLPOOL 5ed257dab795fa0057f334313c8cf10e441b75a6a601a69669b768ee184f9eac68608d1094ec4fc8564894b2f70e76cf95b97ea0b1fa92ab1c2dda86792410ef
+MISC metadata.xml 926 SHA256 71766485eac6593e84b57885a4ecdd945700276f699ae0e2f041ef0fa2e4287e SHA512 2da828f1c2eca2eff95c972eadbf48a59a610966a0eac30d45302ff8ff133069121fd8d14e2a1135d866b2a4610b772f6a74445fa1324959dac08ec353284a41 WHIRLPOOL 61c4316c57e6fc9451ef928fa81a0becf2f3c4b3c4fcb2fb23896655b8bd0c1471797d84fa0c86a5502e1c02421f9605b62bbb83ee1893a3d2f7af8167436dfc
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