From fb20e3f85e6e158e7f3a13b5de473ccaba372a03 Mon Sep 17 00:00:00 2001
From: David Seifert <soap@gentoo.org>
Date: Sun, 23 Oct 2022 20:18:05 +0100
Subject: sci-biology/eugene: fix clang 16 build

Closes: https://bugs.gentoo.org/875476
Signed-off-by: David Seifert <soap@gentoo.org>
---
 sci-biology/eugene/eugene-4.1d-r1.ebuild           |  1 +
 sci-biology/eugene/files/eugene-4.1d-clang16.patch | 22 ++++++++++++++++++++++
 2 files changed, 23 insertions(+)
 create mode 100644 sci-biology/eugene/files/eugene-4.1d-clang16.patch

(limited to 'sci-biology/eugene')

diff --git a/sci-biology/eugene/eugene-4.1d-r1.ebuild b/sci-biology/eugene/eugene-4.1d-r1.ebuild
index b1d9f409c096..40fb83ffc058 100644
--- a/sci-biology/eugene/eugene-4.1d-r1.ebuild
+++ b/sci-biology/eugene/eugene-4.1d-r1.ebuild
@@ -27,6 +27,7 @@ PATCHES=(
 	"${FILESDIR}"/${PN}-4.1d-fix-c++14.patch
 	"${FILESDIR}"/${PN}-4.1d-Wformat.patch
 	"${FILESDIR}"/${PN}-4.1d-portable-getopt.patch
+	"${FILESDIR}"/${PN}-4.1d-clang16.patch
 )
 
 src_prepare() {
diff --git a/sci-biology/eugene/files/eugene-4.1d-clang16.patch b/sci-biology/eugene/files/eugene-4.1d-clang16.patch
new file mode 100644
index 000000000000..21a3ec0a8b62
--- /dev/null
+++ b/sci-biology/eugene/files/eugene-4.1d-clang16.patch
@@ -0,0 +1,22 @@
+--- a/src/GDIF/gdIF.c
++++ b/src/GDIF/gdIF.c
+@@ -228,7 +228,7 @@
+ 		    ToY(phase, pos), (unsigned char *)st, Col[col]);
+ }
+ 
+-void ClosePNG()
++void ClosePNG(void)
+ {
+   int i;
+ 
+--- a/src/SensorPlugins/0_SensorTk/markov.cc
++++ b/src/SensorPlugins/0_SensorTk/markov.cc
+@@ -790,7 +790,7 @@
+ // cumule les valeurs des cases des codons synonymes et renvoie le total.
+ template<class CHAINE, typename T> T TabChaine<CHAINE,T> :: cumuleVAL (int indice) const
+ {
+-  char* codegenetique=CODEGENETIQUE;
++  const char* codegenetique=CODEGENETIQUE;
+   T cumul=0;
+   for (int i=0 ; i<64 ; i++) {
+     if ( codegenetique[i] == codegenetique[indice] )
-- 
cgit v1.2.3-65-gdbad