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authorFlorian Schmaus <flow@gentoo.org>2022-07-24 09:26:05 +0200
committerFlorian Schmaus <flow@gentoo.org>2022-07-24 10:17:00 +0200
commit3d0c52a5874a9ed005a28bdbf5aa4cd56e5ae25a (patch)
treed4d47a1cfbb64df4e442247efe8c6b00d14c7065 /dev-python/seaborn
parentdev-ruby/mustermann: stabilize 1.1.2 for amd64 (diff)
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dev-python/seaborn: fix or deselect tests with matplotlib 3.5
Some Seaborn 0.11.2 tests fail with matplotlib 3.5. This backports an upstream patch [1] and deselects those that are not fixed by the patch. 1: https://github.com/mwaskom/seaborn/pull/2690 Closes: https://bugs.gentoo.org/860384 Signed-off-by: Florian Schmaus <flow@gentoo.org>
Diffstat (limited to 'dev-python/seaborn')
-rw-r--r--dev-python/seaborn/files/seaborn-Update-tests-for-compatability-with-matplotlib-3.5.0.patch280
-rw-r--r--dev-python/seaborn/seaborn-0.11.2.ebuild23
2 files changed, 302 insertions, 1 deletions
diff --git a/dev-python/seaborn/files/seaborn-Update-tests-for-compatability-with-matplotlib-3.5.0.patch b/dev-python/seaborn/files/seaborn-Update-tests-for-compatability-with-matplotlib-3.5.0.patch
new file mode 100644
index 000000000000..9f46a59145f1
--- /dev/null
+++ b/dev-python/seaborn/files/seaborn-Update-tests-for-compatability-with-matplotlib-3.5.0.patch
@@ -0,0 +1,280 @@
+From 262bb95402e405489f6d58bb96dcb06fcd24f0ba Mon Sep 17 00:00:00 2001
+From: Michael Waskom <mwaskom@users.noreply.github.com>
+Date: Sun, 31 Oct 2021 16:52:06 -0400
+Subject: [PATCH] Update tests for compatability with matplotlib 3.5.0 (#2690)
+
+* Update boxplot tests for mpl3.5 compatability
+
+* Update kdeplot tests for mpl3.5 compatability
+
+* Update legend tests for mpl3.5 compatability
+
+* Pin docutils to avoid buggy interaction with sphinx
+
+[ flow: modified to apply on top of 0.11.2 ]
+
+Modified-by: Florian Schmaus <flow@gentoo.org>
+---
+ seaborn/tests/test_categorical.py | 30 +++++++++------
+ seaborn/tests/test_distributions.py | 58 ++++++++++++++++++++---------
+ 3 files changed, 61 insertions(+), 28 deletions(-)
+
+diff --git a/seaborn/tests/test_categorical.py b/seaborn/tests/test_categorical.py
+index a0b0393c330c..ac41a8885773 100644
+--- a/seaborn/tests/test_categorical.py
++++ b/seaborn/tests/test_categorical.py
+@@ -28,6 +28,14 @@ class CategoricalFixture:
+ df = pd.DataFrame(dict(y=y, g=g, h=h, u=u))
+ x_df["W"] = g
+
++ def get_box_artists(self, ax):
++
++ if Version(mpl.__version__) < Version("3.5.0b0"):
++ return ax.artists
++ else:
++ # Exclude labeled patches, which are for the legend
++ return [p for p in ax.patches if not p.get_label()]
++
+
+ class TestCategoricalPlotter(CategoricalFixture):
+
+@@ -772,12 +780,12 @@ class TestBoxPlotter(CategoricalFixture):
+ def test_axes_data(self):
+
+ ax = cat.boxplot(x="g", y="y", data=self.df)
+- assert len(ax.artists) == 3
++ assert len(self.get_box_artists(ax)) == 3
+
+ plt.close("all")
+
+ ax = cat.boxplot(x="g", y="y", hue="h", data=self.df)
+- assert len(ax.artists) == 6
++ assert len(self.get_box_artists(ax)) == 6
+
+ plt.close("all")
+
+@@ -785,14 +793,14 @@ class TestBoxPlotter(CategoricalFixture):
+
+ ax = cat.boxplot(x="g", y="y", data=self.df, saturation=1)
+ pal = palettes.color_palette(n_colors=3)
+- for patch, color in zip(ax.artists, pal):
++ for patch, color in zip(self.get_box_artists(ax), pal):
+ assert patch.get_facecolor()[:3] == color
+
+ plt.close("all")
+
+ ax = cat.boxplot(x="g", y="y", hue="h", data=self.df, saturation=1)
+ pal = palettes.color_palette(n_colors=2)
+- for patch, color in zip(ax.artists, pal * 2):
++ for patch, color in zip(self.get_box_artists(ax), pal * 2):
+ assert patch.get_facecolor()[:3] == color
+
+ plt.close("all")
+@@ -801,7 +809,7 @@ class TestBoxPlotter(CategoricalFixture):
+
+ ax = cat.boxplot(x="g", y="y", data=self.df,
+ order=["a", "b", "c", "d"])
+- assert len(ax.artists) == 3
++ assert len(self.get_box_artists(ax)) == 3
+
+ def test_missing_data(self):
+
+@@ -811,13 +819,13 @@ class TestBoxPlotter(CategoricalFixture):
+ y[-2:] = np.nan
+
+ ax = cat.boxplot(x=x, y=y)
+- assert len(ax.artists) == 3
++ assert len(self.get_box_artists(ax)) == 3
+
+ plt.close("all")
+
+ y[-1] = 0
+ ax = cat.boxplot(x=x, y=y, hue=h)
+- assert len(ax.artists) == 7
++ assert len(self.get_box_artists(ax)) == 7
+
+ plt.close("all")
+
+@@ -2504,11 +2512,11 @@ class TestCatPlot(CategoricalFixture):
+
+ g = cat.catplot(x="g", y="y", data=self.df, kind="box")
+ want_artists = self.g.unique().size
+- assert len(g.ax.artists) == want_artists
++ assert len(self.get_box_artists(g.ax)) == want_artists
+
+ g = cat.catplot(x="g", y="y", hue="h", data=self.df, kind="box")
+ want_artists = self.g.unique().size * self.h.unique().size
+- assert len(g.ax.artists) == want_artists
++ assert len(self.get_box_artists(g.ax)) == want_artists
+
+ g = cat.catplot(x="g", y="y", data=self.df,
+ kind="violin", inner=None)
+@@ -2858,14 +2866,14 @@ class TestBoxenPlotter(CategoricalFixture):
+
+ ax = cat.boxenplot(x="g", y="y", data=self.df, saturation=1)
+ pal = palettes.color_palette(n_colors=3)
+- for patch, color in zip(ax.artists, pal):
++ for patch, color in zip(self.get_box_artists(ax), pal):
+ assert patch.get_facecolor()[:3] == color
+
+ plt.close("all")
+
+ ax = cat.boxenplot(x="g", y="y", hue="h", data=self.df, saturation=1)
+ pal = palettes.color_palette(n_colors=2)
+- for patch, color in zip(ax.artists, pal * 2):
++ for patch, color in zip(self.get_box_artists(ax), pal * 2):
+ assert patch.get_facecolor()[:3] == color
+
+ plt.close("all")
+diff --git a/seaborn/tests/test_distributions.py b/seaborn/tests/test_distributions.py
+index 737d6ccdaddc..57b380c32ca1 100644
+--- a/seaborn/tests/test_distributions.py
++++ b/seaborn/tests/test_distributions.py
+@@ -39,6 +39,27 @@ from .._testing import (
+ )
+
+
++def get_contour_coords(c):
++ """Provide compatability for change in contour artist type in mpl3.5."""
++ # See https://github.com/matplotlib/matplotlib/issues/20906
++ if isinstance(c, mpl.collections.LineCollection):
++ return c.get_segments()
++ elif isinstance(c, mpl.collections.PathCollection):
++ return [p.vertices[:np.argmax(p.codes) + 1] for p in c.get_paths()]
++
++
++def get_contour_color(c):
++ """Provide compatability for change in contour artist type in mpl3.5."""
++ # See https://github.com/matplotlib/matplotlib/issues/20906
++ if isinstance(c, mpl.collections.LineCollection):
++ return c.get_color()
++ elif isinstance(c, mpl.collections.PathCollection):
++ if c.get_facecolor().size:
++ return c.get_facecolor()
++ else:
++ return c.get_edgecolor()
++
++
+ class TestDistPlot(object):
+
+ rs = np.random.RandomState(0)
+@@ -803,7 +824,10 @@ class TestKDEPlotUnivariate:
+ for label, level in zip(legend_labels, order):
+ assert label.get_text() == level
+
+- legend_artists = ax.legend_.findobj(mpl.lines.Line2D)[::2]
++ legend_artists = ax.legend_.findobj(mpl.lines.Line2D)
++ if Version(mpl.__version__) < Version("3.5.0b0"):
++ # https://github.com/matplotlib/matplotlib/pull/20699
++ legend_artists = legend_artists[::2]
+ palette = color_palette()
+ for artist, color in zip(legend_artists, palette):
+ assert to_rgb(artist.get_color()) == to_rgb(color)
+@@ -854,7 +878,7 @@ class TestKDEPlotBivariate:
+ f, ax = plt.subplots()
+ kdeplot(data=long_df, x="x", y="y", hue="c", fill=fill)
+ for c in ax.collections:
+- if fill:
++ if fill or Version(mpl.__version__) >= Version("3.5.0b0"):
+ assert isinstance(c, mpl.collections.PathCollection)
+ else:
+ assert isinstance(c, mpl.collections.LineCollection)
+@@ -870,8 +894,8 @@ class TestKDEPlotBivariate:
+ kdeplot(x=x, y=y, hue=hue, common_norm=True, ax=ax1)
+ kdeplot(x=x, y=y, hue=hue, common_norm=False, ax=ax2)
+
+- n_seg_1 = sum([len(c.get_segments()) > 0 for c in ax1.collections])
+- n_seg_2 = sum([len(c.get_segments()) > 0 for c in ax2.collections])
++ n_seg_1 = sum([len(get_contour_coords(c)) > 0 for c in ax1.collections])
++ n_seg_2 = sum([len(get_contour_coords(c)) > 0 for c in ax2.collections])
+ assert n_seg_2 > n_seg_1
+
+ def test_log_scale(self, rng):
+@@ -898,7 +922,7 @@ class TestKDEPlotBivariate:
+ ax2.contour(10 ** xx, yy, density, levels=levels)
+
+ for c1, c2 in zip(ax1.collections, ax2.collections):
+- assert_array_equal(c1.get_segments(), c2.get_segments())
++ assert_array_equal(get_contour_coords(c1), get_contour_coords(c2))
+
+ def test_bandwidth(self, rng):
+
+@@ -911,7 +935,7 @@ class TestKDEPlotBivariate:
+ kdeplot(x=x, y=y, bw_adjust=2, ax=ax2)
+
+ for c1, c2 in zip(ax1.collections, ax2.collections):
+- seg1, seg2 = c1.get_segments(), c2.get_segments()
++ seg1, seg2 = get_contour_coords(c1), get_contour_coords(c2)
+ if seg1 + seg2:
+ x1 = seg1[0][:, 0]
+ x2 = seg2[0][:, 0]
+@@ -936,9 +960,9 @@ class TestKDEPlotBivariate:
+ kdeplot(x=x, y=y, hue=hue, weights=weights, ax=ax2)
+
+ for c1, c2 in zip(ax1.collections, ax2.collections):
+- if c1.get_segments() and c2.get_segments():
+- seg1 = np.concatenate(c1.get_segments(), axis=0)
+- seg2 = np.concatenate(c2.get_segments(), axis=0)
++ if get_contour_coords(c1) and get_contour_coords(c2):
++ seg1 = np.concatenate(get_contour_coords(c1), axis=0)
++ seg2 = np.concatenate(get_contour_coords(c2), axis=0)
+ assert not np.array_equal(seg1, seg2)
+
+ def test_hue_ignores_cmap(self, long_df):
+@@ -946,7 +970,7 @@ class TestKDEPlotBivariate:
+ with pytest.warns(UserWarning, match="cmap parameter ignored"):
+ ax = kdeplot(data=long_df, x="x", y="y", hue="c", cmap="viridis")
+
+- color = tuple(ax.collections[0].get_color().squeeze())
++ color = tuple(get_contour_color(ax.collections[0]).squeeze())
+ assert color == mpl.colors.colorConverter.to_rgba("C0")
+
+ def test_contour_line_colors(self, long_df):
+@@ -955,7 +979,7 @@ class TestKDEPlotBivariate:
+ ax = kdeplot(data=long_df, x="x", y="y", color=color)
+
+ for c in ax.collections:
+- assert tuple(c.get_color().squeeze()) == color
++ assert tuple(get_contour_color(c).squeeze()) == color
+
+ def test_contour_fill_colors(self, long_df):
+
+@@ -987,7 +1011,7 @@ class TestKDEPlotBivariate:
+ kdeplot(**plot_kws, levels=np.linspace(thresh, 1, n), ax=ax2)
+
+ for c1, c2 in zip(ax1.collections, ax2.collections):
+- assert_array_equal(c1.get_segments(), c2.get_segments())
++ assert_array_equal(get_contour_coords(c1), get_contour_coords(c2))
+
+ with pytest.raises(ValueError):
+ kdeplot(**plot_kws, levels=[0, 1, 2])
+@@ -999,7 +1023,7 @@ class TestKDEPlotBivariate:
+ kdeplot(**plot_kws, levels=n, thresh=0, ax=ax2)
+
+ for c1, c2 in zip(ax1.collections, ax2.collections):
+- assert_array_equal(c1.get_segments(), c2.get_segments())
++ assert_array_equal(get_contour_coords(c1), get_contour_coords(c2))
+ for c1, c2 in zip(ax1.collections, ax2.collections):
+ assert_array_equal(c1.get_facecolors(), c2.get_facecolors())
+
+@@ -2246,13 +2270,13 @@ class TestDisPlot:
+ z = [0] * 80 + [1] * 20
+
+ g = displot(x=x, y=y, col=z, kind="kde", levels=10)
+- l1 = sum(bool(c.get_segments()) for c in g.axes.flat[0].collections)
+- l2 = sum(bool(c.get_segments()) for c in g.axes.flat[1].collections)
++ l1 = sum(bool(get_contour_coords(c)) for c in g.axes.flat[0].collections)
++ l2 = sum(bool(get_contour_coords(c)) for c in g.axes.flat[1].collections)
+ assert l1 > l2
+
+ g = displot(x=x, y=y, col=z, kind="kde", levels=10, common_norm=False)
+- l1 = sum(bool(c.get_segments()) for c in g.axes.flat[0].collections)
+- l2 = sum(bool(c.get_segments()) for c in g.axes.flat[1].collections)
++ l1 = sum(bool(get_contour_coords(c)) for c in g.axes.flat[0].collections)
++ l2 = sum(bool(get_contour_coords(c)) for c in g.axes.flat[1].collections)
+ assert l1 == l2
+
+ def test_bivariate_hist_norm(self, rng):
+--
+2.35.1
+
diff --git a/dev-python/seaborn/seaborn-0.11.2.ebuild b/dev-python/seaborn/seaborn-0.11.2.ebuild
index 16a604584049..9f8f3dfec034 100644
--- a/dev-python/seaborn/seaborn-0.11.2.ebuild
+++ b/dev-python/seaborn/seaborn-0.11.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
@@ -23,9 +23,30 @@ RDEPEND="
"
BDEPEND="test? ( dev-python/nose[${PYTHON_USEDEP}] )"
+PATCHES=(
+ "${FILESDIR}"/${PN}-Update-tests-for-compatability-with-matplotlib-3.5.0.patch
+)
+
distutils_enable_tests pytest
python_test() {
+ # Tests fail due to a newer matplotlib (3.5) being used. Was fixed
+ # upstream in https://github.com/mwaskom/seaborn/issues/2663 but not
+ # for the 0.11 branch. Partially backported in
+ # seaborn-Update-tests-for-compatability-with-matplotlib-3.5.0.patch.
+ local EPYTEST_DESELECT=(
+ 'seaborn/tests/test_categorical.py::TestBoxPlotter::test_axes_data'
+ 'seaborn/tests/test_categorical.py::TestBoxPlotter::test_box_colors'
+ 'seaborn/tests/test_categorical.py::TestBoxPlotter::test_draw_missing_boxes'
+ 'seaborn/tests/test_categorical.py::TestBoxPlotter::test_missing_data'
+ 'seaborn/tests/test_categorical.py::TestCatPlot::test_plot_elements'
+ 'seaborn/tests/test_categorical.py::TestBoxenPlotter::test_box_colors'
+ 'seaborn/tests/test_distributions.py::TestKDEPlotUnivariate::test_legend'
+ 'seaborn/tests/test_distributions.py::TestKDEPlotBivariate::test_fill_artists'
+ 'seaborn/tests/test_distributions.py::TestDisPlot::test_with_rug[kwargs0]'
+ 'seaborn/tests/test_distributions.py::TestDisPlot::test_with_rug[kwargs1]'
+ 'seaborn/tests/test_distributions.py::TestDisPlot::test_with_rug[kwargs2]'
+ )
cat > matplotlibrc <<- EOF || die
backend : Agg
EOF