app-sci/bioperl-run/bioperl-run-1.4.ebuild


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# Copyright 1999-2004 Gentoo Technologies, Inc.
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/app-sci/bioperl-run/bioperl-run-1.4.ebuild,v 1.1 2004/01/09 02:59:06 sediener Exp $

inherit perl-module eutils
CATEGORY="app-sci"

DESCRIPTION="collection of tools for bioinformatics, genomics and life science research : subset required to run analyses"
HOMEPAGE="http://www.bioperl.org/"
#SRC_URI="http://www.cpan.org/modules/by-module/Bio/${P}.tar.gz"
SRC_URI="http://www.bioperl.org/ftp/DIST/${P}.tar.gz"

LICENSE="Artistic GPL-2"
SLOT="0"
KEYWORDS="~x86"
IUSE=""

RDEPEND="
	dev-perl/Algorithm-Diff
	dev-perl/File-Temp
	dev-perl/IO-String
	dev-perl/XML-Parser"

DEPEND="${RDEPEND}"

src_compile() {
	perl-module_src_compile || die "compile failed"
	# make test
	#perl-module_src_test || die "src test failed"
}

src_install() {
	mydoc="AUTHORS BUGS INSTALL.PROGRAMS README"
	perl-module_src_install

	# bioperl scripts and examples
	einfo 'Adding bioperl examples and scripts to /usr/share/...'
	dodir /usr/share/${PF}/scripts
	#insinto /usr/share/${PF}/scripts
	cd ${S}/scripts/
	tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -)
	dodir /usr/share/${PF}/examples
	cd ${S}/examples/
	tar cf - ./ | ( cd ${D}/usr/share/${PF}/examples; tar xf -)
	cd ${S}

}