diff -Naur ViennaRNA-1.7.2/Perl/Makefile.am ViennaRNA-1.7.2.new/Perl/Makefile.am --- ViennaRNA-1.7.2/Perl/Makefile.am 2007-12-19 05:33:14.000000000 -0500 +++ ViennaRNA-1.7.2.new/Perl/Makefile.am 2008-10-06 14:20:54.000000000 -0400 @@ -4,7 +4,7 @@ RNA.i tmaps.i Makefile.perl: Makefile.PL Makefile - @PerlCmd@ Makefile.PL + @PerlCmd@ Makefile.PL LDDLFLAGS="${LDFLAGS} -shared" # the perl command repairs some errors in the SWIG CVS version RNA_wrap.c: RNA.i tmaps.i diff -Naur ViennaRNA-1.7.2/Readseq/Makefile ViennaRNA-1.7.2.new/Readseq/Makefile --- ViennaRNA-1.7.2/Readseq/Makefile 2008-01-23 05:32:00.000000000 -0500 +++ ViennaRNA-1.7.2.new/Readseq/Makefile 2008-10-06 14:21:13.000000000 -0400 @@ -40,7 +40,7 @@ build: $(SOURCES) @echo "Compiling readseq..." - $(CC) $(CFLAGS) -o readseq readseq.c ureadseq.c + $(CC) $(LDFLAGS) $(CFLAGS) -o readseq readseq.c ureadseq.c # if using NCBI, uncomment these lines in place of build: above #build: $(SOURCES)