From bf71ae461c09dc6e9d659f3d87da5dc1b9353948 Mon Sep 17 00:00:00 2001 From: Olivier Fisette Date: Sat, 21 Jan 2006 17:34:58 +0000 Subject: Removed obsolete versions. Ebuild clean-up. Package-Manager: portage-2.0.53 --- sci-biology/bioperl-run/ChangeLog | 8 +++- sci-biology/bioperl-run/bioperl-run-1.2.2.ebuild | 54 ---------------------- sci-biology/bioperl-run/bioperl-run-1.4.ebuild | 15 +++--- .../bioperl-run/files/digest-bioperl-run-1.2.2 | 1 - 4 files changed, 13 insertions(+), 65 deletions(-) delete mode 100644 sci-biology/bioperl-run/bioperl-run-1.2.2.ebuild delete mode 100644 sci-biology/bioperl-run/files/digest-bioperl-run-1.2.2 (limited to 'sci-biology/bioperl-run') diff --git a/sci-biology/bioperl-run/ChangeLog b/sci-biology/bioperl-run/ChangeLog index c55412595bc0..61e5de453b24 100644 --- a/sci-biology/bioperl-run/ChangeLog +++ b/sci-biology/bioperl-run/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/bioperl-run -# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.6 2005/11/28 12:02:35 mcummings Exp $ +# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.7 2006/01/21 17:34:58 ribosome Exp $ + + 21 Jan 2006; Olivier Fisette + -bioperl-run-1.2.2.ebuild, bioperl-run-1.4.ebuild: + Removed obsolete versions. Ebuild clean-up. 28 Nov 2005; bioperl-run-1.2.2.ebuild, bioperl-run-1.4.ebuild: diff --git a/sci-biology/bioperl-run/bioperl-run-1.2.2.ebuild b/sci-biology/bioperl-run/bioperl-run-1.2.2.ebuild deleted file mode 100644 index 7b5c44f27ef1..000000000000 --- a/sci-biology/bioperl-run/bioperl-run-1.2.2.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2005 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.2.2.ebuild,v 1.6 2005/11/28 12:02:35 mcummings Exp $ - -inherit perl-app eutils - -DESCRIPTION="A collection of tools for bioinformatics, genomics and life science research: subset required to run analyses" -HOMEPAGE="http://www.bioperl.org/" -#SRC_URI="http://www.cpan.org/modules/by-module/Bio/${P}.tar.gz" -SRC_URI="http://www.bioperl.org/ftp/DIST/${P}.tar.gz" - -LICENSE="Artistic GPL-2" -SLOT="0" -KEYWORDS="x86" -IUSE="" - -RDEPEND=" - dev-perl/Algorithm-Diff - perl-core/File-Temp - dev-perl/IO-String - dev-perl/XML-Parser" - -DEPEND="" - -src_unpack() { - unpack ${A} - cd ${S} - # remove interactiveness - epatch ${FILESDIR}/bioperl-run-Pise-test-patch.diff -} - -src_compile() { - # there's a test to run for BioGFFDB if using mysql - perl-module_src_compile || die "compile failed" - # make test -## perl-module_src_test || die "src test failed" -} - -src_install() { - mydoc="AUTHORS BUGS FAQ" - perl-module_src_install - - # bioperl scripts and examples - einfo 'Adding bioperl examples and scripts to /usr/share/...' - dodir /usr/share/${PF}/scripts - #insinto /usr/share/${PF}/scripts - cd ${S}/scripts/ - tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -) - dodir /usr/share/${PF}/examples - cd ${S}/examples/ - tar cf - ./ | ( cd ${D}/usr/share/${PF}/examples; tar xf -) - cd ${S} - -} diff --git a/sci-biology/bioperl-run/bioperl-run-1.4.ebuild b/sci-biology/bioperl-run/bioperl-run-1.4.ebuild index 147a9c83f42c..1fc72ede89cf 100644 --- a/sci-biology/bioperl-run/bioperl-run-1.4.ebuild +++ b/sci-biology/bioperl-run/bioperl-run-1.4.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2005 Gentoo Foundation +# Copyright 1999-2006 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.4.ebuild,v 1.6 2005/11/28 12:02:35 mcummings Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.4.ebuild,v 1.7 2006/01/21 17:34:58 ribosome Exp $ inherit perl-app eutils @@ -36,11 +36,10 @@ src_install() { einfo 'Adding bioperl examples and scripts to /usr/share/...' dodir /usr/share/${PF}/scripts #insinto /usr/share/${PF}/scripts - cd ${S}/scripts/ - tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -) + cd "${S}"/scripts/ + tar cf - ./ | ( cd "${D}"/usr/share/${PF}/scripts; tar xf -) dodir /usr/share/${PF}/examples - cd ${S}/examples/ - tar cf - ./ | ( cd ${D}/usr/share/${PF}/examples; tar xf -) - cd ${S} - + cd "${S}"/examples/ + tar cf - ./ | ( cd "${D}"/usr/share/${PF}/examples; tar xf -) + cd "${S}" } diff --git a/sci-biology/bioperl-run/files/digest-bioperl-run-1.2.2 b/sci-biology/bioperl-run/files/digest-bioperl-run-1.2.2 deleted file mode 100644 index cf92f27aa20d..000000000000 --- a/sci-biology/bioperl-run/files/digest-bioperl-run-1.2.2 +++ /dev/null @@ -1 +0,0 @@ -MD5 2ffbaa69e713f102f86c7b7462ccff52 bioperl-run-1.2.2.tar.gz 811989 -- cgit v1.2.3-65-gdbad