Remove old ebuilds. Requested by Arfrever

Package-Manager: portage-2.1.9.49/cvs/Linux x86_64

4 files changed, 36 insertions, 77 deletions

diff --git a/sci-biology/augustus/Manifest b/sci-biology/augustus/Manifest
index ac4c474ecc21..a33b1cf78846 100644
--- a/sci-biology/augustus/Manifest
+++ b/sci-biology/augustus/Manifest
@@ -1,28 +1,21 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA512
+Hash: SHA1
 
+AUX augustus-2.5.5-sane-build.patch 5271 RMD160 ae586d1bda342d5f4f3d8ba00d4f239f28ad7821 SHA1 8e250e8676cc9381d6c968ea8dec6d059cbfedf7 SHA256 0e8692203f1cc994398bc639d101b2be915c4747a5d234d0d564cf0ada6e9ebc
 DIST augustus.2.3.1.src.tar.gz 27314034 RMD160 232a5e7c6469e5bb2a4f839e823dcb86c9b45dc9 SHA1 a0d951c4bf13a7c8c2cbc7d43a94e4429fa4dfff SHA256 d8914deb74abe52d4a9922a3f976ca272bdf1f666f5a957ff4d011b5846690dd
 DIST augustus.2.4.src.tar.gz 34114141 RMD160 9ad0c98f55f79060115eda228ad4d88a5e7ae63e SHA1 dfadcdb77b8c67ccb1a9603400ba996eb640c24a SHA256 8b6667ef479458f16dc2b4763bfbe671ba1551cab6cc81fc0522d9b992da939c
+DIST augustus.2.5.5.tar.gz 70826249 RMD160 7f757e2ec5b52719ef3ac89c5f3e2f6c140e880f SHA1 35cb4758ae0871c55fe8b29dc97bebd93445047e SHA256 2bd97784fa651addf836e2100a7d4106b43e50fe06f13c664001d4625d0eab9a
 DIST augustus.2.5.tar.gz 54589077 RMD160 60f5c1e7c21f12c9475afdcc7948d0af9a767b5b SHA1 1abc9f966d8c7a361a373d3a4c7303b7a4dbf48b SHA256 0b92eb4ec0242e97022a80dd2708140755556fb5d4a0f0b7334e81d033cb501f
-EBUILD augustus-2.3.1.ebuild 879 RMD160 36364895a163edbb046e1de2f28911020eb8aac3 SHA1 83c984380bf5d27928eb9e5c17059e73071f6f97 SHA256 34dbac0a95d40bd3008c29baaefa94f57ecdda8bbf11ca693770bfd72cda428f
-EBUILD augustus-2.4.ebuild 1044 RMD160 0d906613d6fe68a2ec2a9ffa911e0190c2c390f7 SHA1 228efe163a49bad56665843cadd8f36596de672a SHA256 7b85e5ddeb05d0f7988a2ff6c439d357651d3008a41e9f3287c5343c0f1af3d8
-EBUILD augustus-2.5.ebuild 1064 RMD160 e7c7d280b1fa9c2b34ffffe0ee26abdb9dd4536b SHA1 b29740e67d65640e626082dd9b22a5690397833b SHA256 4289bfde1f536e18fc5125b0c2cf08ce043509983994488683d269f5a9dd3f86
-MISC ChangeLog 1912 RMD160 71ce9392b37ffe3e3ae62613c434250aa5661eff SHA1 f664463f402f5ea658860ca4dd0d1283082f0636 SHA256 a346521256ee5096f6574eb1333ec5ae80b92eb1659790047669914cd89a1187
+EBUILD augustus-2.3.1.ebuild 876 RMD160 65fb433df70711b24674783b314747f916f7939f SHA1 7c803617d58bbc7a6f52fe03d97f8e485d5b5827 SHA256 244247921d68cfe58f377b3246ea8ec660d7a5c43eae78fee509677bee6b3a38
+EBUILD augustus-2.4.ebuild 1038 RMD160 48d907a93555538b319f2f8a574f4b9f240e15e1 SHA1 e2266d9cc0004c1242c54bf7739497135fcc96e4 SHA256 f5194b9b5e2a79375fe8f41b7cd3fb918fa51d0cd668e57dd8cea872d6a2a7d9
+EBUILD augustus-2.5.5.ebuild 1127 RMD160 2868f5130f00f52b8223cebb455082ad876b00e4 SHA1 f3bfcdf67f80065444e738bf4e04cb81fa4c63a9 SHA256 d70cc19a649ca1ed9505d7303b5c91ba5c329824807f917a73321cebc711c0fa
+EBUILD augustus-2.5.ebuild 1060 RMD160 ac8fabfcc6982e2eb395bf502ad8253d7a74a8f3 SHA1 db35612f1b74f45586b41a9ee16f9fd9834734a8 SHA256 4b81db588c24589b57fcb7ab4900ffbd7a4c9557f89274c7c5f41e9c93490541
+MISC ChangeLog 2161 RMD160 b3d60ecf209ed01c36b0268b3cd6ba1493f2eb1f SHA1 e63c252b79190b277672a0dd49babec9083599b3 SHA256 f3fc68a4740ce30e4c96ac7894eee9d9ba80999089a2ad29eacbe11e5d3a17b7
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
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diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog
index 24455604e034..d8188ff3ab11 100644
--- a/sci-biology/biopython/ChangeLog
+++ b/sci-biology/biopython/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/biopython
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.64 2011/05/28 13:52:36 ranger Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.65 2011/06/23 14:55:47 hwoarang Exp $
+
+  23 Jun 2011; Markos Chandras <hwoarang@gentoo.org> -biopython-1.56.ebuild:
+  Remove old ebuilds. Requested by Arfrever
 
   28 May 2011; Brent Baude <ranger@gentoo.org> biopython-1.57.ebuild:
   Marking biopython-1.57 ppc for bug 365877
diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest
index 89c12900b592..513b88c3eddc 100644
--- a/sci-biology/biopython/Manifest
+++ b/sci-biology/biopython/Manifest
@@ -1,7 +1,25 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA512
+
 AUX biopython-1.51-flex.patch 782 RMD160 a69deb13b97f80ec6aed7ec7975e0de4846fe2fa SHA1 dad1c962a632efeccbbec61b79feb71abccbe030 SHA256 ad957b435fc70b218a7a65eb492b0eae5f82b7c6371d2f1451c9dd714fa056dc
-DIST biopython-1.56.tar.gz 6939664 RMD160 a1c2b0daa4a881052b5e300c59293b8896240f2c SHA1 d33dda23adb148cf4ae0fa5eb37f7396b26c856f SHA256 a6f2b9af4494bf7c0d6d043643ec0e9c2e39d8858874c287604d4aa8e10531f1
 DIST biopython-1.57.tar.gz 6945024 RMD160 ae061442a97decbd9951af8f85913bbc3747ffee SHA1 dbbd23c9f555e0c69d61db96f8aa368617ecacef SHA256 07c16a86127770c8d5b653a6e82fee0999159f7284a3a01c98cf66ed2f0ec4a0
-EBUILD biopython-1.56.ebuild 1425 RMD160 0f042b94f73419770ffc756bbaf825d86019e6bc SHA1 e1f84350c16fa93fde75d2a5a76cbbbfe9bfc225 SHA256 1ef57e91ce2ece1b18c15c0547858d786864df4111a3e7eacbb0b0e17b1ef4e7
 EBUILD biopython-1.57.ebuild 1427 RMD160 8ace67eb6086526d1113b05f3019cd70f2c531ec SHA1 532b8fd3d6ecad7c3d64f1bbd908ab6afa6607aa SHA256 9fee7df9ef9f8e3cb8f83993f49daf855500be23cff8af268c3ca9ae4bf4a177
-MISC ChangeLog 10202 RMD160 b3fce00992adc260e82c5c96c382bb7adf859f28 SHA1 066426ca54bf7111e1543403a39b5551bf107ff2 SHA256 929f7c49ba5ec3d16abb7caf6e94fc877108fe06f9e34352b0d2494339a4c623
+MISC ChangeLog 10326 RMD160 e0dcab17ec14bbd5790e620682ca843513501031 SHA1 051cc395a080eddd0e1e9cd3e43607cef2159e30 SHA256 ee2d613415bd34966cdcef23b3c55c21b2678a15141232fe81c6905f1dc6af32
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
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diff --git a/sci-biology/biopython/biopython-1.56.ebuild b/sci-biology/biopython/biopython-1.56.ebuild
deleted file mode 100644
index dba68e060fec..000000000000
--- a/sci-biology/biopython/biopython-1.56.ebuild
+++ /dev/null
@@ -1,55 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.56.ebuild,v 1.6 2011/05/06 10:14:58 jlec Exp $
-
-EAPI=3
-PYTHON_DEPEND="2"
-SUPPORT_PYTHON_ABIS="1"
-RESTRICT_PYTHON_ABIS="3.* *-jython"
-
-inherit distutils eutils
-
-DESCRIPTION="Python modules for computational molecular biology"
-HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"
-SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
-
-LICENSE="as-is"
-SLOT="0"
-KEYWORDS="amd64 ppc x86"
-IUSE="mysql postgres"
-
-RDEPEND="
-	dev-python/numpy
-	dev-python/reportlab
-	mysql? ( dev-python/mysql-python )
-	postgres? ( dev-python/psycopg )"
-DEPEND="${RDEPEND}
-	sys-devel/flex"
-
-PYTHON_CFLAGS=("2.* + -fno-strict-aliasing")
-
-DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1"
-DOCS="CONTRIB DEPRECATED NEWS README"
-PYTHON_MODNAME="Bio BioSQL"
-
-src_prepare() {
-	distutils_src_prepare
-	epatch "${FILESDIR}/${PN}-1.51-flex.patch"
-}
-
-src_test() {
-	testing() {
-		cd Tests
-		PYTHONPATH="$(ls -d ../build/lib.*)" "$(PYTHON)" run_tests.py
-	}
-	python_execute_function --nonfatal -s testing
-}
-
-src_install() {
-	distutils_src_install
-
-	insinto /usr/share/doc/${PF}
-	doins -r Doc/* || die "Installation of documentation failed"
-	insinto /usr/share/${PN}
-	cp -r --preserve=mode Scripts Tests "${ED}usr/share/${PN}" || die "Installation of shared files failed"
-}