diff options
| author |   Sergei Trofimovich <slyfox@gentoo.org> | 2013-09-12 20:23:31 +0000 |
|---|---|---|
| committer | Sergei Trofimovich <slyfox@gentoo.org> | 2013-09-12 20:23:31 +0000 |
| commit | 462b135cf9cbde44dbbada4fffb03e7b5ac41cdc (patch) | |
| tree | 6d3f4395da56ee1eea09717275e3d251ee18c0dd /sci-biology | |
| parent | Analyze 454 flowgrams (.SFF files) (requested by Martin MOKREJŠ). (diff) | |
| download | historical-462b135cf9cbde44dbbada4fffb03e7b5ac41cdc.tar.gz historical-462b135cf9cbde44dbbada4fffb03e7b5ac41cdc.tar.bz2 historical-462b135cf9cbde44dbbada4fffb03e7b5ac41cdc.zip | |
Analyze 454 flowgrams (.SFF files) (requested by Martin MOKREJŠ).
Package-Manager: portage-2.2.1_p20/cvs/Linux x86_64
Manifest-Sign-Key: 0x611FF3AA
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/flower/Manifest | 13 | ||||
| -rw-r--r-- | sci-biology/flower/flower-0.7-r1.ebuild | 34 | ||||
| -rw-r--r-- | sci-biology/flower/metadata.xml | 24 |
3 files changed, 70 insertions, 1 deletions
diff --git a/sci-biology/flower/Manifest b/sci-biology/flower/Manifest index 6816f7cf2c9f..2b758be30bb3 100644 --- a/sci-biology/flower/Manifest +++ b/sci-biology/flower/Manifest @@ -1,3 +1,14 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA256 + DIST flower-0.7.tar.gz 10781 SHA256 df24ba9831603d09af29599d8ab229cf636fe9ec9edcb723eb96ca0f297b7129 SHA512 3f7fe93943e3fcc005dc9c91669e820b9ddbc32501c388381ba6a2c9e35dea2e4c42d0db8919e7a98ae5e40866643af4b90c387bee7868d51f0aa0c01bd85d6c WHIRLPOOL d2db86dcd559e0a3d8c1823db4af3bad80275af56181e6f620c5addc90c185973cad5948e4138a035dd794f6a9ab9745edb3736ad1256fd1378bc571fc58d585 -EBUILD flower-0.7-r1.ebuild 751 SHA256 9e43e3ca1c35f8f45c8ae2f9a7c8f1ba1945e022c40abb51075c629e7e081f15 SHA512 4d37d94290e8d084f0aa26a655df925497aec21a6fe928ea5f0947c716a984bda49c1507eba5c3003462de8f0e269b7b83d83fb01dac92f3a2417205d73a66c4 WHIRLPOOL e202592c7e33eefda2be8291be3c565dd777e032e44ffdd81016d144fbaf0198e3c35e58117d618a97026edb8caa4f43cb96722045c1ed0de06ac3e414ddaa03 +EBUILD flower-0.7-r1.ebuild 851 SHA256 6af98c8a3784c0cc554d01b288068bc6f7e32c45051e1b96435087de6bf3f1ed SHA512 2cc7caef8fe4fecad4e92f3c1d64626053e26583cb03b00e9b8a9e1e5e3223e35cc8c220568801fa3b4baafa72787fba7bf9f7876ac45a1e3ae76f9b67dcaed6 WHIRLPOOL 4700be7912b1e12703c11297be9dcda24f7888f1c89aab5fbb8b7a452e3f7939f161cff42278008609cc43b2598926614079ece4336cb7e2fcea7110cb16e28a +MISC ChangeLog 403 SHA256 98e466624a4ecdde3a2b62ee1d83415923722e8f75a7cb472385bca88e9fa9dc SHA512 910ec49d7f4e046b99094bd6bf308298034a313a4fde4682c141eb13f2762c281450ee6c113bd29b4fabfef0838533ed5d617b5a2beabf35dea1e53f84d05cdd WHIRLPOOL 967ca13a11730df3d4dc71d8b6582ea447af22f66546b62a7e8a93af0cc3022d233bad2022a3f585bda5119e5239a43cbeb1da7cb49b8609b74ba3f694bf518e MISC metadata.xml 1016 SHA256 f953d05cd071c0f4bc8d8ce67f42f7e5d7afa6d2c992c3cd4444ea7f4609e029 SHA512 71ae5703a5ba6df9a24ac5f7c11fc078ccd064fb00ef9326913e287616ad32dbff15d4af35692caba741f99f631b571d62cc02682a948e1e510a4171bad016f5 WHIRLPOOL 23ac76ea1d42d9ff062d0b4768dd42852ac3e575104ddb415dc00ec6cbfd02b9420b9f7e1d446f5f4e4e4ba17d81ac9dcee40e391ea0a16a901b1e0f5b69d590 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.20 (GNU/Linux) + +iEUEAREIAAYFAlIyIdsACgkQcaHudmEf86p5VgCeLCBC5V7o8U4P0VnnuKlZedWD +WuMAmNEzg3qtPzxKaBOBx2ImYEZ7dC8= +=HDyv +-----END PGP SIGNATURE----- diff --git a/sci-biology/flower/flower-0.7-r1.ebuild b/sci-biology/flower/flower-0.7-r1.ebuild new file mode 100644 index 000000000000..4f5b566d9acb --- /dev/null +++ b/sci-biology/flower/flower-0.7-r1.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/flower/flower-0.7-r1.ebuild,v 1.1 2013/09/12 20:23:27 slyfox Exp $ + +# ebuild generated by hackport 0.2.17.9999 + +EAPI=5 + +CABAL_FEATURES="bin" +inherit haskell-cabal + +DESCRIPTION="Analyze 454 flowgrams (.SFF files)" +HOMEPAGE="http://biohaskell.org/Applications/Flower" +SRC_URI="mirror://hackage/packages/archive/${PN}/${PV}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RDEPEND="" +DEPEND="${RDEPEND} + >=dev-haskell/binary-0.4 <dev-haskell/binary-0.8 + >=dev-haskell/bio-0.4.9 + >=dev-haskell/cabal-1.6 + >=dev-haskell/cmdargs-0.5 + dev-haskell/mtl + dev-haskell/random + >=dev-lang/ghc-6.10.1" + +src_prepare() { + cabal_chdeps \ + 'binary == 0.4.*' 'binary >= 0.4 && <0.8' +} diff --git a/sci-biology/flower/metadata.xml b/sci-biology/flower/metadata.xml new file mode 100644 index 000000000000..dcaae2095b0e --- /dev/null +++ b/sci-biology/flower/metadata.xml @@ -0,0 +1,24 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>haskell</herd> + <maintainer> + <email>haskell@gentoo.org</email> + </maintainer> + <longdescription> + flower - FLOWgram ExtractoR tools + + The flower executable reads files in SFF-format and produces various output, + including sequences with quality, or flowgram data in tabular format. By default, + it outputs a textual representation of the data in the SFF-file, much like + 'sffinfo' from Roche does. + + The fselect executable extracts reads from SFF-files, generating a new + SFF-file with a subset of the reads based on various criteria. + + Sometimes SFF files will appear to be corrupted, with all-zero blocks in the + file. The frecover program ignores these and tries to resync with the file after an + invalid region. This was likely a one-time bug in the 454 software, so this program + is probably not so useful any more. + </longdescription> +</pkgmetadata> |