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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
inherit eutils toolchain-funcs
DESCRIPTION="Eukaryotic gene predictor"
HOMEPAGE="http://augustus.gobics.de/"
SRC_URI="http://bioinf.uni-greifswald.de/augustus/binaries/${P}.tar.gz"
LICENSE="GPL-3"
# temporary drop in licensing scheme, see http://stubber.math-inf.uni-greifswald.de/bioinf/augustus/binaries/HISTORY.TXT
# http://stubber.math-inf.uni-greifswald.de/bioinf/augustus/binaries/LICENCE.TXT
# LICENSE="Artistic"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="examples"
RDEPEND="
sci-libs/gsl
dev-libs/boost
sys-libs/zlib"
DEPEND="${RDEPEND}
sys-devel/flex"
src_prepare() {
# TODO: do we need anything from the 2.5.5 patch?
# epatch "${FILESDIR}"/${P}-sane-build.patch
tc-export CC CXX
}
src_compile() {
emake clean && emake
}
src_install() {
dobin bin/*
# dobin src/{augustus,etraining,consensusFinder,curve2hints,fastBlockSearch,prepareAlign}
exeinto /usr/libexec/${PN}
doexe scripts/*.p*
insinto /usr/libexec/${PN}
doins scripts/*.conf
insinto /usr/share/${PN}
doins -r config
echo "AUGUSTUS_CONFIG_PATH=\"/usr/share/${PN}/config\"" > "${S}/99${PN}"
doenvd "${S}/99${PN}"
dodoc -r README.TXT HISTORY.TXT docs/*.{pdf,txt}
if use examples; then
insinto /usr/share/${PN}/
doins -r docs/tutorial examples
fi
}
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