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diff --git a/licenses/procheck b/licenses/procheck new file mode 100644 index 000000000..793379cc3 --- /dev/null +++ b/licenses/procheck @@ -0,0 +1,230 @@ + + + PROCHECK - Stereochemical Quality of Protein Structures + ------------------------------------------------------- + and AQUA for PROCHECK-NMR + ------------------------- + + CONFIDENTIALITY AGREEMENT + ------------------------- + + + +In regard to the PROCHECK suite of programs, specified in Appendix 1 +herewith and the AQUA suite of programs specified in Appendix 2 herewith +(the Software) supplied to us, the copyright and other intellectual +property rights to which belong to the authors, we + + __________________________________________________________________ + +undertake to the authors that we shall be bound by the following terms and +conditions:- + +1. We will receive the Software and any related documentation in confidence +and will not use the same except for the purpose of the department's own +research. The Software will be used only by such of our officers or +employees to whom it must reasonably be communicated to enable us to +undertake our research and who agree to be bound by the same confidence. +The department shall procure and enforce such agreement from its staff for +the benefit of the authors. + +2. The publication of research using the Software must reference + + "Laskowski R A, MacArthur M W, Moss D S & Thornton J M (1993). PROCHECK: + a program to check the stereochemical quality of protein + structures. J. Appl. Cryst., 26, 283-291." + +and + + "Rullmann J A C (1996). AQUA, Computer Program, Department of NMR + Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht + University, The Netherlands." + + +3. Research shall take place solely at the department's premises at + + __________________________________________________________________ + +4. All forms of the Software will be kept in a reasonably secure place to +prevent unauthorised access. + +5. Each copy of the Software or, if not practicable then, any package +associated therewith shall be suitably marked (and such marking maintained) +with the following copyright notice: " Copyright 1992 M W MacArthur, R A +Laskowski, D S Moss, J A C Rullmann & J M Thornton All Rights Reserved". + +6. The Software may be modified but any changes made shall be made +available to the authors. + +7. The Software shall be used exclusively for academic teaching and +research. The Software will not be used for any commercial research or +research associated with an industrial company. + +8. The confidentiality obligation in paragraph one shall not apply: + + (i) to information and data known to the department at the time of + receipt hereunder (as evidenced by its written records); + + (ii) to information and data which was at the time of receipt in the + public domain or thereafter becomes so through no wrongful act of + the department; + + (iii) to information and data which the department receives from a third + party not in breach of any obligation of confidentiality owed to + the authors. + + + +Please sign this Undertaking and return a copy of it to indicate that you +have read, understood and accepted the above terms. + + + + For and on behalf of _____________________________ + + _________________________________________________ + + .................................................. + + Dated ............................................ + + + + +APPENDIX 1 - DETAILS OF THE PROCHECK SUITE OF PROGRAMS PROVIDED (v.3.4.3) +--------------------------------------------------------------- + +Files to be included +-------------------- + + 1. anglen.f } + 2. anglen.inc } + 3. bplot.f } + 4. bplot.inc } + 5. brkcln.par } + 6. clean.f } + 7. gfac2pdb.f } + 8. gfac2pdb.inc } + 9. mplot.f } + 10. mplot.inc } Source program files + 11. nb.c } + 12. pplot.f } + 13. pplot.inc } + 14. ps.f } + 15. rmsdev.f } + 16. rmsdev.inc } + 17. secstr.f } + 18. sstruc.par } + 19. tplot.f } + 20. tplot.inc } + 21. viol2pdb.f } + 22. viol2pdb.inc } + 23. vplot.f } + 24. vplot.inc } + 25. gfac2pdb.scr } + 26. procheck.com } + 27. procheck.scr } + 28. procheck_comp.com } + 29. procheck_comp.scr } + 30. procheck_nmr.scr } + 31. proplot.com } + 32. proplot.scr } Script files + 33. proplot_comp.scr } + 34. proplot_nmr.scr } + 35. proplot_comp.com } + 36. prosub.com } + 37. setup.com } + 38. setup.scr } + 39. viol2pdb.scr } + 40. convax.for } + 41. procomp.com } Installation files + 42. procomp.scr } + 43. maninst.ps } + 44. manual.tar.Z } Documentation files + 45. nmr_manual.tar.Z } + 46. procheck.dat } + 47. procheck.prm } Data + 48. procheck_comp.prm } files + 49. procheck_nmr.prm } + + +APPENDIX 2 - DETAILS OF THE AQUA SUITE OF PROGRAMS PROVIDED (v.0.40) +----------------------------------------------------------- + +Files to be included +-------------------- + +Source files:- +------------ + +AquaCalc.c AquaCalc.h + AquaData.h +AquaDist.c AquaDist.h +AquaFiles.c AquaFiles.h +AquaFuncts.c AquaFuncts.h +AquaFuncts_biosym.c AquaFuncts_biosym.h +AquaFuncts_cv.c AquaFuncts_cv.h +AquaFuncts_io.c AquaFuncts_io.h +AquaFuncts_pdb.c AquaFuncts_pdb.h +AquaFuncts_pdbmr.c AquaFuncts_pdbmr.h +AquaHow.c AquaHow.h + AquaMacros.h +AquaPseudo.c AquaPseudo.h +AquaStrucset.c AquaStrucset.h + AquaTypes.h +AquaWhat.c AquaWhat.h +Qext.c Qext.h +Range.c Range.h + cv_subs.h + +Script files:- +------------ +ReadNrv.pm* convDIANAtorsrestr qdbext* +aqdrst* convDISGEOdistrestr qguessc* +aqpc* convDISGEOtorsrestr qguessr* +aqpcsel convMRTABLE qhelp* +aquanal.pl* convXPLORdistrestr qmodr* +clean0* convXPLORtorsrestr qsplitr* +convBIOSYMdistrestr makecmm* qsumm* +convBIOSYMtorsrestr qconvert* qsumm_aux1* +convDIANAdistrestr qconvr* qsumm_aux2* + +Documentation:- +------------- +README models.txt qconvr.txt +aqpc.txt mr.txt qdbext.txt +aqua_setup.txt names.txt qext.txt +biosym.txt overview.txt qhelp.txt +chains.txt perl.txt qsumm.txt +conversion.txt procheck.txt restraint_format.txt +dbas.txt qanal.txt setup.txt +intro.txt qclean.txt torsion.txt +log.txt qconvert.txt xplor.txt + +Extras:- +------ +joinpdb* splitpdb* + + + +Please complete the above form, sign it, and then send or fax to:- + + +Roman Laskowski +European Bioinformatics Institute, +Wellcome Trust Genome Campus, +Hinxton, +Cambridge, CB10 1SD, +United Kingdom + +Fax:- +44 (0)1223 494 468 + +If you have any problems either installing the software or running it, +please e-mail your problems to:- + + roman@ebi.ac.uk + +Questions about AQUA should be directed to Ton Rullmann at + + rull@nmr.chem.ruu.nl + |