sci-chemistry/rosetta added

11 files changed, 531 insertions, 0 deletions

diff --git a/sci-chemistry/rosetta/ChangeLog b/sci-chemistry/rosetta/ChangeLog
new file mode 100644
index 000000000..69d600fb2
--- /dev/null
+++ b/sci-chemistry/rosetta/ChangeLog
@@ -0,0 +1,17 @@
+# ChangeLog for sci-chemistry/rosetta
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*rosetta-3.0 (13 Apr 2009)
+*rosetta-3.0-r1 (13 Apr 2009)
+
+  13 Apr 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
+  +files/3.0-boinc.patch, +files/3.0-fix-scons-warnings.patch,
+  +files/3.0-fix-valgrind.patch, +files/3.0-platform.patch,
+  +files/3.0-user-settings.patch, +files/3.0-zlib.patch, +metadata.xml,
+  +rosetta-3.0-r1.ebuild, +rosetta-3.0.ebuild:
+  Added to sci
+  Thanks to Hugo Mildenberger for intial ebuild 
+  BOINC support is broken because current version of libboinc_zip.a sucks (TEXTREL, not
+     compiled w/ fPIC)
+
diff --git a/sci-chemistry/rosetta/Manifest b/sci-chemistry/rosetta/Manifest
new file mode 100644
index 000000000..c3ab1c2d6
--- /dev/null
+++ b/sci-chemistry/rosetta/Manifest
@@ -0,0 +1,11 @@
+AUX 3.0-boinc.patch 1465 RMD160 03589223e1e4a7ecf0a6a8d33aa6917c736ea176 SHA1 bb31126516df3fcdebb33fd1cb1a1c9a8332d764 SHA256 8b659950a55812eff06618e0b65e7b88eed0e115140a347674ab58975869b558
+AUX 3.0-fix-scons-warnings.patch 3784 RMD160 85066633038304cec3d64c42ca8c20c3aebb4a00 SHA1 426c8574442aece0aed7294118e0d90ca4b63bef SHA256 d026e79f7bdf4e8d12f690f38dd1fad3a6eeeabec7858d7f23bd4db0581c0262
+AUX 3.0-fix-valgrind.patch 442 RMD160 de52c31b1d61659a8b7ff1cbc1ea4533814f21cb SHA1 8d77340882f7e71b84cae04ae4d2c5c7e913641f SHA256 718f55aa0f52999eaef4a437dbe806a1a9e0c015904a04f17e292c2ca9c2987c
+AUX 3.0-platform.patch 431 RMD160 2359b805d3d87f58eeff88864e1ebd0cba02d2ae SHA1 f9f5249cdd1da3ad261f8d4747366eb26aa3cbcc SHA256 3fc457b037ca2735978255240a43cacf35ebab2c61f29202d484ea035221901f
+AUX 3.0-user-settings.patch 989 RMD160 fbdb678459c4663d181eb83b1ed4d58fcc507065 SHA1 e90cfd9b9055d8dc3b0e3029ff20ae05fd5fb601 SHA256 0b751e7a885faa0645de0d3450f6b3229c2959d5b42dc7dd77956199947b77df
+AUX 3.0-zlib.patch 289 RMD160 dac6ffb48adff95d7ea5a8aa90ebe8be13087a6a SHA1 6336f6d23a924ce42943ea5959937ab397cb9365 SHA256 ee8cae00b2098b4e672fa46b60a35d381cc17d5ccbc6bbf38cdf966777ff1f03
+DIST rosetta3_source.tgz 98443598 RMD160 09c7bdaef58ef761bfdc8143c38f81f814be41a4 SHA1 3477856807a6fb4898c8c2aa7852b3b6e4fe90ee SHA256 1870727caea342c3b55af7c353b991758fe1cf4a395a65b48543708e52dc75c5
+EBUILD rosetta-3.0-r1.ebuild 3421 RMD160 d064ed1856baca5a6693574ac6e188e07b715a4d SHA1 f71700a6d06174b64d0d10208e98c3f0db4afc67 SHA256 28c7005b7cff4276cc3ed2055fbbb6f65f83139abb2e857827eaf99efedfe3a5
+EBUILD rosetta-3.0.ebuild 3171 RMD160 db7babe0444366a7d2c9bb946bfd23596971cd9c SHA1 e7ffd0664ab2da8b653dbba4c5eeb4af74a818cf SHA256 0d0328abe99edb5a89f7463b240c2f4fbffc88f9606de4acac629783b2b7d3c5
+MISC ChangeLog 655 RMD160 e1d43b2957924a0b5e3a346eb268072d9aaa9a87 SHA1 35896430dc84c433d54142b2d9d25298c97a3e3e SHA256 652ff3e717111dbbdf5ee564a2c2f3f3d5b5ac24ff509852e3107eb0a8c4d5c7
+MISC metadata.xml 450 RMD160 13d6fc607a68ab354ae5e01887aa96152c1838fd SHA1 857337c1113dfe1826ea2ba81694e416440a4e55 SHA256 979b679698fd4b06b80ce01558fba3759219e071787a56fd036ee8dfa51ee8ac
diff --git a/sci-chemistry/rosetta/files/3.0-boinc.patch b/sci-chemistry/rosetta/files/3.0-boinc.patch
new file mode 100644
index 000000000..1f6da965c
--- /dev/null
+++ b/sci-chemistry/rosetta/files/3.0-boinc.patch
@@ -0,0 +1,53 @@
+--- src/protocols/boinc/boinc_shmem.hh	2009-02-03 22:47:07.000000000 +0100
++++ src/protocols/boinc/boinc_shmem.hh.new	2009-04-09 14:59:15.000000000 +0200
+@@ -18,7 +18,7 @@
+ #include <core/types.hh>
+ 
+ #ifdef BOINC
+-#include "boinc_api.h"
++#include "boinc/boinc_api.h"
+ #endif
+ 
+ namespace protocols {
+--- src/protocols/boinc/boinc.hh	2009-02-03 22:47:07.000000000 +0100
++++ src/protocols/boinc/boinc.hh.new	2009-04-09 15:00:57.000000000 +0200
+@@ -20,11 +20,11 @@
+ #include <boinc_win.h>
+ #include <str_util.h>
+ #endif
+-#include <boinc_api.h>
+-#include <diagnostics.h>
+-#include <error_numbers.h>
++#include <boinc/boinc_api.h>
++#include <boinc/diagnostics.h>
++#include <boinc/error_numbers.h>
+ #ifdef BOINC_GRAPHICS
+-#include <graphics2.h>
+-#include <util.h>
+-#include <shmem.h>
++#include <boinc/graphics2.h>
++#include <boinc/util.h>
++#include <boinc/shmem.h>
+ 
+--- src/utility/exit.cc	2009-02-03 22:47:28.000000000 +0100
++++ src/utility/exit.cc.new	2009-04-09 16:23:18.000000000 +0200
+@@ -23,7 +23,7 @@
+ // Boinc headers
+ #ifdef BOINC
+ #include <utility/io/izstream.hh>
+-#include <boinc_api.h>
++#include <boinc/boinc_api.h>
+ #include <string>
+ #endif
+ 
+--- src/utility/boinc/boinc_util.cc	2009-02-03 22:47:30.000000000 +0100
++++ src/utility/boinc/boinc_util.cc.new	2009-04-09 16:25:16.000000000 +0200
+@@ -20,7 +20,7 @@
+ //#ifdef _WIN32
+ //#include <boinc_win.h>
+ //#endif
+-#include <boinc_api.h>
++#include <boinc/boinc_api.h>
+ 
+ // C++ headers
+ #include <iostream>
diff --git a/sci-chemistry/rosetta/files/3.0-fix-scons-warnings.patch b/sci-chemistry/rosetta/files/3.0-fix-scons-warnings.patch
new file mode 100644
index 000000000..321d0a784
--- /dev/null
+++ b/sci-chemistry/rosetta/files/3.0-fix-scons-warnings.patch
@@ -0,0 +1,82 @@
+--- src/SConscript.src	2009-02-03 22:44:31.000000000 +0100
++++ src/SConscript.src.new	2009-04-07 16:25:30.000000000 +0200
+@@ -85,7 +85,7 @@
+ 
+ # Transform the modified settings into SCons Environment variables.
+ # Gives priority to project settings over global settings.
+-env = build.environment.Copy()
++env = build.environment.Clone()
+ env.Prepend(**actual.symbols())
+ 
+ 
+--- tools/build/setup.py	2009-02-03 22:44:32.000000000 +0100
++++ tools/build/setup.py.new	2009-04-07 16:43:42.000000000 +0200
+@@ -42,21 +42,21 @@
+     # Read in the options from the .settings files (1st pass)
+     # This has to be done in two passes, because some legal values
+     # (version numbers) are dependent on the other values
+-    options.AddOptions(
++    options.AddVariables(
+         # Options for the build.  Modifiable on the command-line.
+-        EnumOption("cxx", "Select the C++ compiler to build with",
++        EnumVariable("cxx", "Select the C++ compiler to build with",
+                    defaults.cxx, supported.cxx),
+-        EnumOption("os", "Select the operating system to build for",
++        EnumVariable("os", "Select the operating system to build for",
+                    defaults.os, supported.os),
+-        EnumOption("arch", "Select the processor architecture to build for",
++        EnumVariable("arch", "Select the processor architecture to build for",
+                    defaults.arch, supported.arch),
+-        EnumOption("mode", "Select the optimization mode",
++        EnumVariable("mode", "Select the optimization mode",
+                    defaults.mode, supported.mode),
+-        ListOption("cat", "Select the build category",
++        ListVariable("cat", "Select the build category",
+                    defaults.cat, supported.cat),
+-        ListOption("extras", "Select any extras",
++        ListVariable("extras", "Select any extras",
+                    defaults.extras, supported.extras),
+-        ListOption("log", "Log debugging output",
++        ListVariable("log", "Log debugging output",
+                    defaults.log, supported.log),
+     )
+ 
+--- tools/build/setup.py	2009-04-07 16:44:26.000000000 +0200
++++ tools/build/setup.py.new	2009-04-07 16:46:45.000000000 +0200
+@@ -37,7 +37,7 @@
+ 
+     # Incorporate options in site and user options
+     option_files = [ "%s.options" % (name) for name in ("site", "user") ]
+-    options = Options(option_files)
++    options = Variables(option_files)
+ 
+     # Read in the options from the .settings files (1st pass)
+     # This has to be done in two passes, because some legal values
+@@ -68,12 +68,12 @@
+     cxx  = env["cxx"]
+     os   = env["os"]
+     arch = env["arch"]
+-    options.AddOptions(
+-        EnumOption("cxx_ver", "Select the C++ compiler version",
++    options.AddVariables(
++        EnumVariable("cxx_ver", "Select the C++ compiler version",
+                    defaults.cxx_ver, supported.cxx[cxx]),
+-        EnumOption("os_ver", "Select the operating system version",
++        EnumVariable("os_ver", "Select the operating system version",
+                    defaults.os_ver, supported.os[os]),
+-        EnumOption("arch_size", "Select the architecture bit-size",
++        EnumVariable("arch_size", "Select the architecture bit-size",
+                    defaults.arch_size, supported.arch[arch]),
+         )
+ 
+--- src/SConscript.apps	2009-02-03 22:44:31.000000000 +0100
++++ src/SConscript.apps.new	2009-04-07 16:48:06.000000000 +0200
+@@ -92,7 +92,7 @@
+ 
+ # Transform the modified settings into SCons Environment variables.
+ # Gives priority to project settings over global settings.
+-env = build.environment.Copy()
++env = build.environment.Clone()
+ env.Prepend(**actual.symbols())
+ if "static" not in build.options.extras:
+   env["RPATH"] = build.toplevel + "/build/src/" + build.platform
diff --git a/sci-chemistry/rosetta/files/3.0-fix-valgrind.patch b/sci-chemistry/rosetta/files/3.0-fix-valgrind.patch
new file mode 100644
index 000000000..bc98773c1
--- /dev/null
+++ b/sci-chemistry/rosetta/files/3.0-fix-valgrind.patch
@@ -0,0 +1,11 @@
+--- tools/build/options.settings	2009-02-03 22:44:32.000000000 +0100
++++ tools/build/options.settings.new	2009-04-07 18:12:00.000000000 +0200
+@@ -76,7 +76,7 @@
+         # Build so that valgrind can follow the memory use.
+         # Valgrind normally works fine with most executables but not
+         # with static builds, which we are doing.
+-        "valgrind",
++        "shared",
+ 
+         # Build using static linking.
+         "static",
diff --git a/sci-chemistry/rosetta/files/3.0-platform.patch b/sci-chemistry/rosetta/files/3.0-platform.patch
new file mode 100644
index 000000000..82f0ba63f
--- /dev/null
+++ b/sci-chemistry/rosetta/files/3.0-platform.patch
@@ -0,0 +1,11 @@
+--- ./tools/build/setup_platforms.py	2009-02-03 22:44:32.000000000 +0100
++++ ./tools/build/setup_platforms.py.new	2009-04-07 16:16:44.000000000 +0200
+@@ -274,7 +274,7 @@
+     """
+     # Note that these are very different values, and need processing
+     if globals().has_key("platform"):
+-        return platform.processor() or _uname()[4]
++        return platform.machine() or _uname()[4]
+     else:
+         return _uname()[4]
+ 
diff --git a/sci-chemistry/rosetta/files/3.0-user-settings.patch b/sci-chemistry/rosetta/files/3.0-user-settings.patch
new file mode 100644
index 000000000..bb1201bd2
--- /dev/null
+++ b/sci-chemistry/rosetta/files/3.0-user-settings.patch
@@ -0,0 +1,26 @@
+--- tools/build/user.settings		2009-04-07 18:51:37.000000000 +0200
++++ tools/build/user.settings.new	2009-04-07 18:51:37.000000000 +0200
+@@ -21,16 +21,22 @@
+ settings = {
+     "user" : {
+         "prepends" : {
++            "program_path"  : os.environ["PATH"].split(":"),
++            "include_path"  : [ "/usr/include" ],
++            "library_path"  : [ "/usr/GENTOO_LIBDIR" ],
+         },
+         "appends" : {
+             # Uncomment the line below and the "import os" line above
+             # to let SCons find ICC (assuming it's on your PATH already)
+-            "program_path"  : os.environ["PATH"].split(":"),
+ 
+             # Uncomment the line below to begin building the "devel" project too.
+             #"projects": { "src" : [ "devel", ], },
+         },
+         "overrides" : {
++            "flags" : {
++                  "compile" : [ GENTOO_CXXFLAGS ],
++                  "link"    : [ GENTOO_LDFLAGS ],
++            },
+         },
+         "removes" : {
+         },
diff --git a/sci-chemistry/rosetta/files/3.0-zlib.patch b/sci-chemistry/rosetta/files/3.0-zlib.patch
new file mode 100644
index 000000000..18060add4
--- /dev/null
+++ b/sci-chemistry/rosetta/files/3.0-zlib.patch
@@ -0,0 +1,12 @@
+--- src/utility/io/zipstream.hpp	2009-02-03 22:47:27.000000000 +0100
++++ src/utility/io/zipstream.hpp.new	2009-04-07 19:57:09.000000000 +0200
+@@ -36,8 +36,7 @@
+ 
+ 
+ // Zlib headers
+-#include <zlib/zlib.h>
+-#include <zlib/zutil.h>
++#include <zlib.h>
+ 
+ // C++ headers
+ #include <algorithm>
diff --git a/sci-chemistry/rosetta/metadata.xml b/sci-chemistry/rosetta/metadata.xml
new file mode 100644
index 000000000..fe282659e
--- /dev/null
+++ b/sci-chemistry/rosetta/metadata.xml
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer>
+  <email>sci@gentoo.org</email>
+</maintainer>
+<use>
+	<flag name='boinc'>compile rosetta as a rosetta@home client</flag>
+	<flag name='boost'>compile rosetta with boost supported code</flag>
+</use>
+<upstream>
+	<bugs-to>general-support@mail.rosettacommons.org</bugs-to>
+</upstream>
+</pkgmetadata>
+
+
diff --git a/sci-chemistry/rosetta/rosetta-3.0-r1.ebuild b/sci-chemistry/rosetta/rosetta-3.0-r1.ebuild
new file mode 100644
index 000000000..fc740f4e7
--- /dev/null
+++ b/sci-chemistry/rosetta/rosetta-3.0-r1.ebuild
@@ -0,0 +1,151 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+# boinc support is BROKEN !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+
+
+EAPI="2"
+
+inherit versionator eutils multilib
+
+MY_P="${PN}$(get_major_version)_source"
+
+DESCRIPTION="Prediction and design of protein structures, folding mechanisms, and protein-protein interactions"
+HOMEPAGE="http://www.rosettacommons.org/"
+SRC_URI="${MY_P}.tgz"
+
+LICENSE="|| ( rosetta-academic rosetta-commercial )"
+SLOT="0"
+KEYWORDS="-*"
+IUSE="boinc boost X mpi debug doc"
+RESTRICT="fetch"
+
+RDEPEND="mpi? ( virtual/mpi )
+	boinc? ( sci-misc/boinc[X?] )
+	boost? ( dev-libs/boost )
+	sci-libs/rosetta-db"
+DEPEND="${RDEPEND}
+	>=dev-util/scons-0.96.1
+	doc? ( app-doc/doxygen )
+	X? ( virtual/glut )"
+
+MYCONF=""
+
+S="${WORKDIR}/${MY_P}"
+
+pkg_nofetch() {
+	einfo "Go to ${HOMEPAGE} and get ${A}"
+	einfo "which must be placed in ${DISTDIR}"
+}
+
+pkg_setup() {
+	use mpi && use boinc && \
+	die "you can either use mpi or boinc support"
+}
+
+src_prepare() {
+	local myCXXFLAGS
+	local myLDFLAGS
+
+	epatch "${FILESDIR}"/${PV}-platform.patch
+	epatch "${FILESDIR}"/${PV}-fix-scons-warnings.patch
+	epatch "${FILESDIR}"/${PV}-user-settings.patch
+	epatch "${FILESDIR}"/${PV}-fix-valgrind.patch
+	epatch "${FILESDIR}"/${PV}-boinc.patch
+	rm bin/* -fv
+
+	for i in ${CXXFLAGS}; do
+		myCXXFLAGS="${myCXXFLAGS} \"${i/-/}\","
+	done
+
+	for i in ${LDFLAGS}; do
+		myLDFLAGS="${myLDFLAGS} \"${i/-/}\","
+	done
+
+	sed -e "s:GENTOO_CXXFLAGS:${myCXXFLAGS}:g" \
+		-e "s:GENTOO_LDFLAGS:${myCXXFLAGS} ${myLDFLAGS}:g" \
+		-e "s:GENTOO_LIBDIR:$(get_libdir):g" \
+		-i tools/build/user.settings
+
+	use mpi && \
+	sed -e 's:mpiCC:mpicxx:g' \
+		-i tools/build/basic.settings
+}
+
+src_configure() {
+	local myextras=""
+	local mymode=""
+	local mycxx=""
+
+	use boinc  && EXTRAS="boinc"
+	use boost && EXTRAS=$(my_list_append "${EXTRAS}" "boost")
+	use X && EXTRAS=$(my_list_append "${EXTRAS}" "graphics")
+	use mpi && EXTRAS=$(my_list_append "${EXTRAS}" "mpi")
+
+	COMPILER=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)')
+	mycxx="cxx=${COMPILER}"
+
+	test -n "${EXTRAS}" && myextras="extras=${EXTRAS}"
+
+	if use debug; then
+		mymode="debug"
+	else
+		mymode="release"
+	fi
+
+	MAKEOPTS=$(my_filter_option "${MAKEOPTS}" "--load-average[=0-9.]*")
+	MAKEOPTS=$(my_filter_option "${MAKEOPTS}" "-l[0-9.]*")
+
+	MYCONF="${MAKEOPTS} mode=${mymode} ${myextras} ${mycxx}"
+}
+
+src_compile() {
+	einfo "running 'scons bin cat=src ${MYCONF}' ..."
+	scons bin cat=src ${MYCONF} || die "scons bin cat=src ${MYCONF} failed"
+
+	if use doc; then
+		einfo "running 'scons ${MYCONF} cat=doc' ..."
+		scons ${MYCONF} cat=doc || die "scons failed to build documentation"
+	fi
+}
+
+src_install() {
+	local BIT
+
+	use amd64 && BIT="64"
+	use x86 && BIT="32"
+
+	dolib.so build/src/release/linux/2.6/${BIT}/x86/${COMPILER}/${EXTRAS//,/-}/*.so || \
+	die "failed to install libs"
+
+	if use doc; then
+	   dohtml build/doc/rosetta++/docs/* || die "could not install docs"
+	fi
+
+	cd bin
+	for BIN in *; do
+		newbin ${BIN} ${BIN%%.*} || die "could not install rosetta program files"
+	done
+
+	mv "${D}"/usr/bin/cluster{,-${PN}}
+	mv "${D}"/usr/bin/benchmark{,-${PN}}
+}
+
+my_filter_option() {
+	local value="$1"
+	local exp="$2"
+	local result=`echo ${value} | sed -e s/${exp}//g`
+	echo "${result}"
+	return 0;
+}
+
+my_list_append() {
+	local old_value="$1"
+	local new_value="$2"
+	test -n "${old_value}" && old_value="${old_value},"
+	echo "${old_value}${new_value}"
+	return 0;
+}
+
+
diff --git a/sci-chemistry/rosetta/rosetta-3.0.ebuild b/sci-chemistry/rosetta/rosetta-3.0.ebuild
new file mode 100644
index 000000000..0670f39f0
--- /dev/null
+++ b/sci-chemistry/rosetta/rosetta-3.0.ebuild
@@ -0,0 +1,140 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI="2"
+
+inherit versionator eutils multilib
+
+MY_P="${PN}$(get_major_version)_source"
+
+DESCRIPTION="Prediction and design of protein structures, folding mechanisms, and protein-protein interactions"
+HOMEPAGE="http://www.rosettacommons.org/"
+SRC_URI="${MY_P}.tgz"
+
+LICENSE="|| ( rosetta-academic rosetta-commercial )"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="boost X mpi debug doc"
+RESTRICT="fetch"
+
+RDEPEND="mpi? ( virtual/mpi )
+	boost? ( dev-libs/boost )
+	sci-libs/rosetta-db"
+DEPEND="${RDEPEND}
+	>=dev-util/scons-0.96.1
+	doc? ( app-doc/doxygen )
+	X? ( virtual/glut )"
+
+MYCONF=""
+
+S="${WORKDIR}/${MY_P}"
+
+pkg_nofetch() {
+	einfo "Go to ${HOMEPAGE} and get ${A}"
+	einfo "which must be placed in ${DISTDIR}"
+}
+
+src_prepare() {
+	local myCXXFLAGS
+	local myLDFLAGS
+
+	epatch "${FILESDIR}"/${PV}-platform.patch
+	epatch "${FILESDIR}"/${PV}-fix-scons-warnings.patch
+	epatch "${FILESDIR}"/${PV}-user-settings.patch
+	epatch "${FILESDIR}"/${PV}-fix-valgrind.patch
+	rm bin/* -f
+
+	for i in ${CXXFLAGS}; do
+		myCXXFLAGS="${myCXXFLAGS} \"${i/-/}\","
+	done
+
+	for i in ${LDFLAGS}; do
+		myLDFLAGS="${myLDFLAGS} \"${i/-/}\","
+	done
+
+	sed -e "s:GENTOO_CXXFLAGS:${myCXXFLAGS}:g" \
+		-e "s:GENTOO_LDFLAGS:${myCXXFLAGS} ${myLDFLAGS}:g" \
+		-e "s:GENTOO_LIBDIR:$(get_libdir):g" \
+		-i tools/build/user.settings
+
+	use mpi && \
+	sed -e 's:mpiCC:mpicxx:g' \
+		-i tools/build/basic.settings
+}
+
+src_configure() {
+	local myextras=""
+	local mymode=""
+	local mycxx=""
+
+	use boost && EXTRAS=$(my_list_append "${EXTRAS}" "boost")
+	use X && EXTRAS=$(my_list_append "${EXTRAS}" "graphics")
+	use mpi && EXTRAS=$(my_list_append "${EXTRAS}" "mpi")
+
+	COMPILER=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)')
+	mycxx="cxx=${COMPILER}"
+
+	test -n "${EXTRAS}" && myextras="extras=${EXTRAS}"
+
+	if use debug; then
+		mymode="debug"
+	else
+		mymode="release"
+	fi
+
+	MAKEOPTS=$(my_filter_option "${MAKEOPTS}" "--load-average[=0-9.]*")
+	MAKEOPTS=$(my_filter_option "${MAKEOPTS}" "-l[0-9.]*")
+
+	MYCONF="${MAKEOPTS} mode=${mymode} ${myextras} ${mycxx}"
+}
+
+src_compile() {
+	einfo "running 'scons bin cat=src ${MYCONF}' ..."
+	scons bin cat=src ${MYCONF} || die "scons bin cat=src ${MYCONF} failed"
+
+	if use doc; then
+		einfo "running 'scons ${MYCONF} cat=doc' ..."
+		scons ${MYCONF} cat=doc || die "scons failed to build documentation"
+	fi
+}
+
+src_install() {
+	local BIT
+
+	use amd64 && BIT="64"
+	use x86 && BIT="32"
+
+	dolib.so build/src/release/linux/2.6/${BIT}/x86/${COMPILER}/${EXTRAS//,/-}/*.so || \
+	die "failed to install libs"
+
+	if use doc; then
+	   dohtml build/doc/rosetta++/docs/* || die "could not install docs"
+	fi
+
+	cd bin
+	for BIN in *; do
+		newbin ${BIN} ${BIN%%.*} || die "could not install rosetta program files"
+	done
+
+	mv "${D}"/usr/bin/cluster{,-${PN}}
+	mv "${D}"/usr/bin/benchmark{,-${PN}}
+}
+
+my_filter_option() {
+	local value="$1"
+	local exp="$2"
+	local result=`echo ${value} | sed -e s/${exp}//g`
+	echo "${result}"
+	return 0;
+}
+
+my_list_append() {
+	local old_value="$1"
+	local new_value="$2"
+	test -n "${old_value}" && old_value="${old_value},"
+	echo "${old_value}${new_value}"
+	return 0;
+}
+
+