sci-chemistry/openbabel* moved to tree

9 files changed, 0 insertions, 323 deletions

diff --git a/sci-chemistry/openbabel-perl/ChangeLog b/sci-chemistry/openbabel-perl/ChangeLog
deleted file mode 100644
index cbbfca8ff..000000000
--- a/sci-chemistry/openbabel-perl/ChangeLog
+++ /dev/null
@@ -1,51 +0,0 @@
-# ChangeLog for sci-chemistry/openbabel-perl
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-  26 Mar 2011; Justin Lecher <jlec@gentoo.org> openbabel-perl-2.3.0.ebuild,
-  files/openbabel-perl-2.3.0-makefile.patch:
-  Install into vendor dir
-
-  25 Mar 2011; Reinis Danne <rei4dan@gmail.com> openbabel-perl-2.3.0.ebuild,
-  +files/openbabel-perl-2.3.0-makefile.patch:
-  Fix install in sandbox
-
-*openbabel-perl-2.3.0 (25 Mar 2011)
-*openbabel-perl-2.2.3 (25 Mar 2011)
-
-  25 Mar 2011; Justin Lecher <jlec@gentoo.org> -openbabel-perl-2.2.1.ebuild,
-  -openbabel-perl-2.2.2.ebuild, +openbabel-perl-2.2.3.ebuild,
-  +openbabel-perl-2.3.0.ebuild:
-  Semi broken perl support for openbael
-
-  10 Jul 2010; Andreas K. Huettel (dilfridge) <mail@akhuettel.de>
-  -openbabel-perl-2.2.0.ebuild, openbabel-perl-2.2.1.ebuild,
-  openbabel-perl-2.2.2.ebuild:
-  Silence repoman. Drop openbabel-perl-2.2.0 since dependencies cannot be
-  fulfilled anymore.
-
-*openbabel-perl-2.2.2 (19 Jul 2009)
-
-  19 Jul 2009; Reinis Danne <rei4dan@gmail.com>
-  +openbabel-perl-2.2.2.ebuild, +files/openbabel-perl-2.2.2-makefile.patch:
-  Version bump to 2.2.2
-
-*openbabel-perl-2.2.1 (03 Mar 2009)
-
-  03 Mar 2009; Reinis Danne <rei4dan@gmail.com>
-  +files/openbabel-perl-2.2.1-makefile.patch, +openbabel-perl-2.2.1.ebuild:
-  Version bump to 2.2.1
-
-  28 Feb 2009; Reinis Danne <rei4dan@gmail.com> openbabel-perl-2.2.0.ebuild:
-  Remove untested arches
-
-  21 Feb 2009; Reinis Danne <rei4dan@gmail.com> openbabel-perl-2.2.0.ebuild:
-  sci-chemistry/openbabel-perl: Use EAPI=2, fix swig use
-
-*openbabel-perl-2.2.0 (10 Feb 2009)
-
-  10 Feb 2009; Reinis Danne <rei4dan@gmail.com>
-  +files/openbabel-perl-2.2.0-makefile.patch, +metadata.xml,
-  +openbabel-perl-2.2.0.ebuild:
-  New package sci-chemistry/openbabel-perl, #212212
-
diff --git a/sci-chemistry/openbabel-perl/Manifest b/sci-chemistry/openbabel-perl/Manifest
deleted file mode 100644
index ef573ec3a..000000000
--- a/sci-chemistry/openbabel-perl/Manifest
+++ /dev/null
@@ -1,20 +0,0 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
-AUX openbabel-perl-2.2.0-makefile.patch 1151 RMD160 8e46b23009c938f102874242b4539d912bc7f47e SHA1 cb5616215d3199170759c35968243bf0f9c846f5 SHA256 55f1b90d5e388401eecb56a3fdaf6b33a8eb2326a7a329605624ffd08e6ba81d
-AUX openbabel-perl-2.2.1-makefile.patch 1151 RMD160 8e46b23009c938f102874242b4539d912bc7f47e SHA1 cb5616215d3199170759c35968243bf0f9c846f5 SHA256 55f1b90d5e388401eecb56a3fdaf6b33a8eb2326a7a329605624ffd08e6ba81d
-AUX openbabel-perl-2.2.2-makefile.patch 1151 RMD160 8e46b23009c938f102874242b4539d912bc7f47e SHA1 cb5616215d3199170759c35968243bf0f9c846f5 SHA256 55f1b90d5e388401eecb56a3fdaf6b33a8eb2326a7a329605624ffd08e6ba81d
-AUX openbabel-perl-2.3.0-makefile.patch 1765 RMD160 debf4cd445a8d997beb5686c57ce5723e4ed547d SHA1 7947bd8046523bbb87b471308874fd709b0d5b91 SHA256 07e7d4a02fe656ca74ea4bb9e05388010e5a2f1200d7a8ef688b87edf90d1359
-DIST openbabel-2.2.3.tar.gz 6624028 RMD160 4234baf9773aa6f918bb3fa5a25cab5f657f857e SHA1 e396b27551a106e001ca6c953181657a0a53f43f SHA256 eabc8bdbd68431f441b6b40adde0861b2e99750efd21bbb4870ee0a233feae46
-DIST openbabel-2.3.0.tar.gz 14321281 RMD160 96dafa3c2aca544f79e08b5617ab0da845c28a16 SHA1 408a4bddb7f052fd89c57ea51b4204b721856b16 SHA256 6dadcb256d83b1f2e616fa1853dd1afadb23550a20d1c118b406231a09f861fb
-EBUILD openbabel-perl-2.2.3.ebuild 1234 RMD160 e3cdc94b23213790ff1ca933ef6f81437395c474 SHA1 f5c9ee17eb29bd708fe963e4316eeee113961d4e SHA256 d856a9d852d49d8762057f8f4e90f165637c8eb909d92b8ac92a17baf88e796d
-EBUILD openbabel-perl-2.3.0.ebuild 1107 RMD160 e2c4abc262008b10eb8887ab577dea8879535c16 SHA1 d3d2c3478eef5d2b75c7fdddead158cc744feb8d SHA256 73cdbede3a36149f1006a9c4473ffeeb5323e19e067dbd4f3b6893d29eabcba5
-MISC ChangeLog 1806 RMD160 6e6dc964def48f4259f0a4b398a7fa43d0470ca4 SHA1 c293d1c6328b6ef75acdbda9c5d9669c8e39e4b9 SHA256 2a76a7be281e50a38b3622e7ca2ccd6dad9fcb1fa588bf8e37bc141ff4fbdc44
-MISC metadata.xml 627 RMD160 2eed792ed60ef1e4fe0aba88690f1fc4ff93b3e5 SHA1 d1e9cc0888dfedadb394def1835b272d11d91b38 SHA256 83b3a75fd868e56866941cba2671a75decc1e099e22709b3c6e799767f1e7253
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.17 (GNU/Linux)
-
-iEYEARECAAYFAk2N/00ACgkQgAnW8HDreRan/gCfVmhtDVn2GUUOBk9fp8PIEF3w
-n8QAni9xxpRV6sqgHpJpgdSWp/UkehXs
-=JH7M
------END PGP SIGNATURE-----
diff --git a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.2.0-makefile.patch b/sci-chemistry/openbabel-perl/files/openbabel-perl-2.2.0-makefile.patch
deleted file mode 100644
index 4c5d4c69b..000000000
--- a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.2.0-makefile.patch
+++ /dev/null
@@ -1,25 +0,0 @@
---- Makefile.PL.orig	2009-02-09 15:32:59.000000000 +0200
-+++ Makefile.PL	2009-02-09 15:49:44.000000000 +0200
-@@ -7,16 +7,15 @@
- @ENV{"LD_LIBRARY_PATH"});
- 
- $CC = 'g++';
--$srcdir = '../../src';
- 
- # check if we're compiling in the source directory
- # check first for the static, then change to dynamic if available
--$ldfrom = "\$(OBJECT) $srcdir/.libs/libopenbabel.a -lz"
--    if (-r "$srcdir/.libs/libopenbabel.a") and (-s _) and (-B _);
--$ldfrom = "\$(OBJECT) -L$srcdir/.libs -lopenbabel -lz"
--    if (-r "$srcdir/.libs/libopenbabel.dylib") and (-s _) and (-B _);
--$ldfrom = "\$(OBJECT) -L$srcdir/.libs -lopenbabel -lz"
--    if (-r "$srcdir/.libs/libopenbabel.so") and (-s _) and (-B _);
-+$ldfrom = "\$(OBJECT) /usr/lib/libopenbabel.a -lz"
-+    if (-r "/usr/lib/libopenbabel.a") and (-s _) and (-B _);
-+$ldfrom = "\$(OBJECT) -L/usr/lib -lopenbabel -lz"
-+    if (-r "/usr/lib/libopenbabel.dylib") and (-s _) and (-B _);
-+$ldfrom = "\$(OBJECT) -L/usr/lib -lopenbabel -lz"
-+    if (-r "/usr/lib/libopenbabel.so") and (-s _) and (-B _);
- 
- # See lib/ExtUtils/MakeMaker.pm for details of how to influence
- # the contents of the Makefile that is written.
diff --git a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.2.1-makefile.patch b/sci-chemistry/openbabel-perl/files/openbabel-perl-2.2.1-makefile.patch
deleted file mode 100644
index 4c5d4c69b..000000000
--- a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.2.1-makefile.patch
+++ /dev/null
@@ -1,25 +0,0 @@
---- Makefile.PL.orig	2009-02-09 15:32:59.000000000 +0200
-+++ Makefile.PL	2009-02-09 15:49:44.000000000 +0200
-@@ -7,16 +7,15 @@
- @ENV{"LD_LIBRARY_PATH"});
- 
- $CC = 'g++';
--$srcdir = '../../src';
- 
- # check if we're compiling in the source directory
- # check first for the static, then change to dynamic if available
--$ldfrom = "\$(OBJECT) $srcdir/.libs/libopenbabel.a -lz"
--    if (-r "$srcdir/.libs/libopenbabel.a") and (-s _) and (-B _);
--$ldfrom = "\$(OBJECT) -L$srcdir/.libs -lopenbabel -lz"
--    if (-r "$srcdir/.libs/libopenbabel.dylib") and (-s _) and (-B _);
--$ldfrom = "\$(OBJECT) -L$srcdir/.libs -lopenbabel -lz"
--    if (-r "$srcdir/.libs/libopenbabel.so") and (-s _) and (-B _);
-+$ldfrom = "\$(OBJECT) /usr/lib/libopenbabel.a -lz"
-+    if (-r "/usr/lib/libopenbabel.a") and (-s _) and (-B _);
-+$ldfrom = "\$(OBJECT) -L/usr/lib -lopenbabel -lz"
-+    if (-r "/usr/lib/libopenbabel.dylib") and (-s _) and (-B _);
-+$ldfrom = "\$(OBJECT) -L/usr/lib -lopenbabel -lz"
-+    if (-r "/usr/lib/libopenbabel.so") and (-s _) and (-B _);
- 
- # See lib/ExtUtils/MakeMaker.pm for details of how to influence
- # the contents of the Makefile that is written.
diff --git a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.2.2-makefile.patch b/sci-chemistry/openbabel-perl/files/openbabel-perl-2.2.2-makefile.patch
deleted file mode 100644
index 4c5d4c69b..000000000
--- a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.2.2-makefile.patch
+++ /dev/null
@@ -1,25 +0,0 @@
---- Makefile.PL.orig	2009-02-09 15:32:59.000000000 +0200
-+++ Makefile.PL	2009-02-09 15:49:44.000000000 +0200
-@@ -7,16 +7,15 @@
- @ENV{"LD_LIBRARY_PATH"});
- 
- $CC = 'g++';
--$srcdir = '../../src';
- 
- # check if we're compiling in the source directory
- # check first for the static, then change to dynamic if available
--$ldfrom = "\$(OBJECT) $srcdir/.libs/libopenbabel.a -lz"
--    if (-r "$srcdir/.libs/libopenbabel.a") and (-s _) and (-B _);
--$ldfrom = "\$(OBJECT) -L$srcdir/.libs -lopenbabel -lz"
--    if (-r "$srcdir/.libs/libopenbabel.dylib") and (-s _) and (-B _);
--$ldfrom = "\$(OBJECT) -L$srcdir/.libs -lopenbabel -lz"
--    if (-r "$srcdir/.libs/libopenbabel.so") and (-s _) and (-B _);
-+$ldfrom = "\$(OBJECT) /usr/lib/libopenbabel.a -lz"
-+    if (-r "/usr/lib/libopenbabel.a") and (-s _) and (-B _);
-+$ldfrom = "\$(OBJECT) -L/usr/lib -lopenbabel -lz"
-+    if (-r "/usr/lib/libopenbabel.dylib") and (-s _) and (-B _);
-+$ldfrom = "\$(OBJECT) -L/usr/lib -lopenbabel -lz"
-+    if (-r "/usr/lib/libopenbabel.so") and (-s _) and (-B _);
- 
- # See lib/ExtUtils/MakeMaker.pm for details of how to influence
- # the contents of the Makefile that is written.
diff --git a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.0-makefile.patch b/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.0-makefile.patch
deleted file mode 100644
index 034b60907..000000000
--- a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.0-makefile.patch
+++ /dev/null
@@ -1,28 +0,0 @@
- scripts/CMakeLists.txt   |    2 +-
- scripts/perl/Makefile.PL |    1 +
- 2 files changed, 2 insertions(+), 1 deletions(-)
-
-diff --git a/scripts/CMakeLists.txt b/scripts/CMakeLists.txt
-index bf2527b..3c45111 100644
---- a/scripts/CMakeLists.txt
-+++ b/scripts/CMakeLists.txt
-@@ -223,7 +223,7 @@ if (DO_PERL_BINDINGS)
-         COMMAND ${CMAKE_COMMAND} -E copy ${openbabel_SOURCE_DIR}/scripts/perl/Makefile.PL ${openbabel_BINARY_DIR}/scripts/perl
-         COMMAND ${CMAKE_COMMAND} -E copy ${openbabel_SOURCE_DIR}/scripts/perl/OpenBabel.pm ${openbabel_BINARY_DIR}/scripts/perl
-         COMMAND ${CMAKE_COMMAND} -E copy ${openbabel_SOURCE_DIR}/scripts/perl/openbabel-perl.cpp ${openbabel_BINARY_DIR}/scripts/perl
--        COMMAND PERL5LIB=${openbabel_SOURCE_DIR}/scripts/perl/inc SRC_DIR=${openbabel_SOURCE_DIR} OBJ_DIR=${openbabel_BINARY_DIR} ${PERL_EXECUTABLE} ${openbabel_BINARY_DIR}/scripts/perl/Makefile.PL ${PERL_PREFIX_TEXT}
-+        COMMAND PERL5LIB=${openbabel_SOURCE_DIR}/scripts/perl/inc SRC_DIR=${openbabel_SOURCE_DIR} OBJ_DIR=${openbabel_BINARY_DIR} ${PERL_EXECUTABLE} ${openbabel_BINARY_DIR}/scripts/perl/Makefile.PL INSTALLDIRS=vendor ${PERL_PREFIX_TEXT}
-         COMMAND PERL5LIB=${openbabel_SOURCE_DIR}/scripts/perl/inc make 
-             DEPENDS ${openbabel_SOURCE_DIR}/scripts/perl/openbabel-perl.cpp
-             WORKING_DIRECTORY ${openbabel_BINARY_DIR}/scripts/perl
-diff --git a/scripts/perl/Makefile.PL b/scripts/perl/Makefile.PL
-index a3a2116..44ad27d 100644
---- a/scripts/perl/Makefile.PL
-+++ b/scripts/perl/Makefile.PL
-@@ -32,5 +32,6 @@ WriteMakefile(
-     'CC'        => $CC,
-     'LD'        => '$(CC)',
-     'INC'       => '-I../../include -I'.$cmakesrcdir.'/include',
-+    'DESTDIR'   => @ENV{"ED"},
-     'OBJECT'    => 'openbabel-perl.o'
- );
diff --git a/sci-chemistry/openbabel-perl/metadata.xml b/sci-chemistry/openbabel-perl/metadata.xml
deleted file mode 100644
index 7dd11d8d7..000000000
--- a/sci-chemistry/openbabel-perl/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci-chemistry</herd>
-<longdescription>
-OpenBabel is a chemical toolbox designed to speak the many languages of
-chemical data. It's an open, collaborative project allowing anyone to
-search, convert, analyze, or store data from molecular modeling, chemistry,
-solid-state materials, biochemistry, or related areas. This package enables
-to access OpenBabel library from Python programs.
-</longdescription>
-<use>
-<flag name='swig'>Enable SWIG language binding regeneration</flag>
-</use>
-</pkgmetadata>
diff --git a/sci-chemistry/openbabel-perl/openbabel-perl-2.2.3.ebuild b/sci-chemistry/openbabel-perl/openbabel-perl-2.2.3.ebuild
deleted file mode 100644
index 45ada92ac..000000000
--- a/sci-chemistry/openbabel-perl/openbabel-perl-2.2.3.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit eutils perl-module
-
-DESCRIPTION="Perl bindings for OpenBabel"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-SRC_URI="mirror://sourceforge/openbabel/openbabel-${PV}.tar.gz"
-
-KEYWORDS="~amd64"
-SLOT="0"
-LICENSE="GPL-2"
-IUSE="swig"
-
-RDEPEND="
-	dev-lang/perl
-	~sci-chemistry/openbabel-${PV}"
-DEPEND="${RDEPEND}
-	swig? ( dev-lang/swig )"
-
-src_unpack() {
-	unpack ${A}
-	S="${WORKDIR}/openbabel-${PV}"
-	cd "${S}"
-
-	econf \
-		$(use_enable swig maintainer-mode) \
-		--enable-static \
-			|| die "econf failed"
-	S="${S}/scripts"
-	cd "${S}"
-	if use swig ; then
-		emake -W openbabel-perl.i perl/openbabel_perl.cpp \
-			|| die "Failed to make SWIG perl bindings"
-	fi
-	S="${S}/perl"
-	cd "${S}"
-	epatch "${FILESDIR}/${P}-makefile.patch" \
-		|| die "Failed to apply ${P}-makefile.patch"
-}
-
-src_compile() {
-	perl-module_src_prep
-	perl-module_src_compile
-}
-
-src_test() {
-	emake test || die "make test failed"
-}
-
-src_install() {
-	perl-module_src_install
-}
-
-pkg_preinst() {
-	perl-module_pkg_preinst
-}
-
-pkg_postinst() {
-	perl-module_pkg_postinst
-}
-
-pkg_prerm() {
-	perl-module_pkg_prerm
-}
-
-pkg_postrm() {
-	perl-module_pkg_postrm
-}
diff --git a/sci-chemistry/openbabel-perl/openbabel-perl-2.3.0.ebuild b/sci-chemistry/openbabel-perl/openbabel-perl-2.3.0.ebuild
deleted file mode 100644
index d3688e13d..000000000
--- a/sci-chemistry/openbabel-perl/openbabel-perl-2.3.0.ebuild
+++ /dev/null
@@ -1,64 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI="3"
-
-inherit cmake-utils eutils perl-module
-
-DESCRIPTION="Perl bindings for OpenBabel"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-SRC_URI="mirror://sourceforge/openbabel/openbabel-${PV}.tar.gz"
-
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-SLOT="0"
-LICENSE="GPL-2"
-IUSE=""
-
-RDEPEND="
-	dev-lang/perl
-	~sci-chemistry/openbabel-${PV}"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}/openbabel-${PV}"
-
-src_prepare() {
-	epatch "${FILESDIR}/${P}-makefile.patch"
-}
-
-src_configure() {
-	local mycmakeargs="-DPERL_BINDINGS=ON"
-	cmake-utils_src_configure
-}
-
-src_compile() {
-	cd "${WORKDIR}/${P}_build/scripts"
-	perl-module_src_prep
-	perl-module_src_compile
-}
-
-src_test() {
-	cd "${WORKDIR}/${P}_build/scripts"
-	emake test || die "make test failed"
-}
-
-src_install() {
-	cd "${WORKDIR}/${P}_build/scripts"
-	perl-module_src_install
-}
-
-pkg_preinst() {
-	perl-module_pkg_preinst
-}
-
-pkg_postinst() {
-	perl-module_pkg_postinst
-}
-
-pkg_prerm() {
-	perl-module_pkg_prerm
-}
-
-pkg_postrm() {
-	perl-module_pkg_postrm
-}