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# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
CATEGORY="sci-biology"
MY_P="RepBase${PV}.fasta"
DESCRIPTION="A database of repetetive genetic elements in various organisms."
HOMEPAGE="http://www.girinst.org"
SRC_URI="${MY_P}.tar.gz"
LICENSE="repbase-agreement"
SLOT="0"
KEYWORDS="~x86 ~amd64"
IUSE=""
DEPEND=""
RDEPEND=""
RESTRICT="fetch"
REPBASELOC="${HOMEPAGE}/server/RepBase/"
REPLIBRARIES="
angrep.ref=repeat_lib_A.gambiae
cbrrep.ref=repeat_lib_C.briggsae
celrep.ref=repeat_lib_C.elegans
drorep.ref=repeat_lib_D.melanogaster
fugrep.ref=repeat_lib_F.rubripes
humrep.ref=repeat_lib_H.sapiens
prirep.ref=repeat_lib_P.troglodyte
rodrep.ref=repeat_lib_M.musculus
rodrep.ref=repeat_lib_R.norvegicus
zebrep.ref=repeat_lib_D.rerio
"
pkg_nofetch()
{
einfo "Please download ${SRC_URI}"
einfo "from ${REPBASELOC} and place it in ${DISTDIR}."
einfo "You will need to register as an academic user at"
einfo "${HOMEPAGE} in order to be"
einfo "allowed to download the file."
}
src_compile()
{
cp ${FILESDIR}/clean ${WORKDIR}
cd ${WORKDIR}
for lib in ${REPLIBRARIES}
do
einfo Cleaning library file ${lib/=*/} to ${lib/*=/}
./clean ${MY_P}/${lib/=*/} ${lib/*=/}
done
}
src_install()
{
cd ${WORKDIR}
install -m 755 -d ${D}/usr/share/${PN}/
for lib in ${REPLIBRARIES}
do
install -m 644 ${lib/*=/} ${D}/usr/share/${PN}/
done
}
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