# Copyright 1999-2009 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.21.ebuild,v 1.4 2009/03/09 19:57:28 weaver Exp $ inherit eutils DESCRIPTION="A rapid whole genome aligner" HOMEPAGE="http://mummer.sourceforge.net/" SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz" LICENSE="Artistic" SLOT="0" IUSE="doc" KEYWORDS="~amd64 ~x86" DEPEND="" RDEPEND="app-shells/tcsh" S="${WORKDIR}/MUMmer${PV}" src_unpack() { unpack ${A} # Warning: package uses CPPFLAGS on c as well as cpp, despite the name sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \ -e 's/LDFLAGS =$//' "${S}/Makefile" || die } src_compile() { emake || die sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \ -e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \ -e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \ -e 's|\(set bindir = \).*|\1/usr/bin|' \ -e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \ -e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \ scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die mv annotate mummer-annotate || die sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh || die } src_install() { dobin $(find . -maxdepth 1 -type f -executable) aux_bin/* || die insinto /usr/share/${PN}/scripts doins scripts/{*.awk,*.csh,*.pl} || die insinto /usr/share/${PN}/lib doins scripts/Foundation.pm || die dodoc ACKNOWLEDGEMENTS ChangeLog README insinto /usr/share/doc/${PF} use doc && doins -r docs }