From 7695bc685812718c0d8bd2360b75730aba91e848 Mon Sep 17 00:00:00 2001 From: Olivier Fisette Date: Sat, 6 Aug 2005 23:01:45 +0000 Subject: New version (Portage version: 2.0.51.22-r2) --- sci-biology/emboss/ChangeLog | 7 +++- sci-biology/emboss/Manifest | 2 + sci-biology/emboss/emboss-3.0.0.ebuild | 60 ++++++++++++++++++++++++++++ sci-biology/emboss/files/digest-emboss-3.0.0 | 1 + 4 files changed, 69 insertions(+), 1 deletion(-) create mode 100644 sci-biology/emboss/emboss-3.0.0.ebuild create mode 100644 sci-biology/emboss/files/digest-emboss-3.0.0 (limited to 'sci-biology/emboss') diff --git a/sci-biology/emboss/ChangeLog b/sci-biology/emboss/ChangeLog index 109233fc75c0..b2fb3785bae6 100644 --- a/sci-biology/emboss/ChangeLog +++ b/sci-biology/emboss/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/emboss # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.14 2005/07/28 02:24:17 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.15 2005/08/06 23:01:45 ribosome Exp $ + +*emboss-3.0.0 (06 Aug 2005) + + 06 Aug 2005; Olivier Fisette +emboss-3.0.0.ebuild: + New version. 28 Jul 2005; Olivier Fisette -emboss-2.9.0.ebuild: Removed old version. diff --git a/sci-biology/emboss/Manifest b/sci-biology/emboss/Manifest index c8b16283cb1e..8decdbb30238 100644 --- a/sci-biology/emboss/Manifest +++ b/sci-biology/emboss/Manifest @@ -1,5 +1,7 @@ +MD5 f6ae35c28694fdbd606d734418aaef3f emboss-3.0.0.ebuild 1821 MD5 cc2652977a4b848bbefb00cd2d476c8c emboss-2.10.0.ebuild 1816 MD5 ff6c01b2bdd0c7a9feca958bdb177d9e ChangeLog 4162 MD5 6051afb1f26bf343082490327784b958 metadata.xml 1013 +MD5 84fbde044d74a82c084fa22d5d59ae8e files/digest-emboss-3.0.0 66 MD5 c518c2734b4848d0c68fa6a057c5ec5d files/digest-emboss-2.10.0 67 MD5 ef2dfa3d13837026f59c0cf5f04f67c5 files/22emboss-r1 110 diff --git a/sci-biology/emboss/emboss-3.0.0.ebuild b/sci-biology/emboss/emboss-3.0.0.ebuild new file mode 100644 index 000000000000..b19ae97209e8 --- /dev/null +++ b/sci-biology/emboss/emboss-3.0.0.ebuild @@ -0,0 +1,60 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/emboss-3.0.0.ebuild,v 1.1 2005/08/06 23:01:45 ribosome Exp $ + +DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package" +HOMEPAGE="http://emboss.sourceforge.net/" +SRC_URI="ftp://${PN}.open-bio.org/pub/EMBOSS/EMBOSS-${PV}.tar.gz" +LICENSE="GPL-2 LGPL-2" + +SLOT="0" +KEYWORDS="~ppc ~ppc-macos ~ppc64 ~x86" +IUSE="X png minimal" + +DEPEND="X? ( virtual/x11 ) + png? ( + sys-libs/zlib + media-libs/libpng + >=media-libs/gd-1.8 + ) + !minimal? ( + sci-biology/primer3 + sci-biology/clustalw + )" + +PDEPEND="!minimal? ( + sci-biology/aaindex + sci-biology/cutg + sci-biology/prints + sci-biology/prosite + sci-biology/rebase + sci-biology/transfac + )" + +S=${WORKDIR}/EMBOSS-${PV} + +src_compile() { + EXTRA_CONF="--includedir=${D}/usr/include/emboss" + ! use X && EXTRA_CONF="${EXTRA_CONF} --without-x" + ! use png && EXTRA_CONF="${EXTRA_CONF} --without-pngdriver" + + econf ${EXTRA_CONF} || die + # Do not install the JEMBOSS component (the --without-java configure option + # does not work). JEMBOSS will be available as a separate package. + sed -i -e 's/SUBDIRS = plplot ajax nucleus emboss test doc jemboss/SUBDIRS = plplot ajax nucleus emboss test doc/' Makefile || die + emake || die +} + +src_install() { + einstall || die + dodoc AUTHORS ChangeLog FAQ NEWS README THANKS + + # Install env file for setting libplplot and acd files path. + insinto /etc/env.d + newins ${FILESDIR}/22emboss-r1 22emboss + + # Symlink preinstalled docs to /usr/share/doc. + dosym /usr/share/EMBOSS/doc/manuals /usr/share/doc/${PF}/manuals + dosym /usr/share/EMBOSS/doc/programs /usr/share/doc/${PF}/programs + dosym /usr/share/EMBOSS/doc/tutorials /usr/share/doc/${PF}/tutorials +} diff --git a/sci-biology/emboss/files/digest-emboss-3.0.0 b/sci-biology/emboss/files/digest-emboss-3.0.0 new file mode 100644 index 000000000000..5dfd3480a664 --- /dev/null +++ b/sci-biology/emboss/files/digest-emboss-3.0.0 @@ -0,0 +1 @@ +MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 -- cgit v1.2.3-65-gdbad