From ebca70b91f94b1b4d448f0fcf2a460c15fd515f6 Mon Sep 17 00:00:00 2001
From: Andrey Kislyuk <weaver@gentoo.org>
Date: Mon, 2 Jan 2012 22:13:24 +0000
Subject: Version bump

(Portage version: 2.2.0_alpha74/cvs/Linux x86_64)
---
 sci-biology/bedtools/ChangeLog              |  9 ++++++--
 sci-biology/bedtools/bedtools-2.15.0.ebuild | 33 +++++++++++++++++++++++++++++
 2 files changed, 40 insertions(+), 2 deletions(-)
 create mode 100644 sci-biology/bedtools/bedtools-2.15.0.ebuild

(limited to 'sci-biology/bedtools')

diff --git a/sci-biology/bedtools/ChangeLog b/sci-biology/bedtools/ChangeLog
index dbf5b6263ac9..a6c655ef86dd 100644
--- a/sci-biology/bedtools/ChangeLog
+++ b/sci-biology/bedtools/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/bedtools
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bedtools/ChangeLog,v 1.1 2011/10/09 04:01:53 weaver Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bedtools/ChangeLog,v 1.2 2012/01/02 22:13:24 weaver Exp $
+
+*bedtools-2.15.0 (02 Jan 2012)
+
+  02 Jan 2012; Andrey Kislyuk <weaver@gentoo.org> +bedtools-2.15.0.ebuild:
+  Version bump
 
 *bedtools-2.13.3 (09 Oct 2011)
 
diff --git a/sci-biology/bedtools/bedtools-2.15.0.ebuild b/sci-biology/bedtools/bedtools-2.15.0.ebuild
new file mode 100644
index 000000000000..69f825cbe108
--- /dev/null
+++ b/sci-biology/bedtools/bedtools-2.15.0.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bedtools/bedtools-2.15.0.ebuild,v 1.1 2012/01/02 22:13:24 weaver Exp $
+
+EAPI=4
+
+inherit flag-o-matic
+
+DESCRIPTION="Tools for manipulation and analysis of BED, GFF/GTF, VCF, and SAM/BAM file formats"
+HOMEPAGE="http://code.google.com/p/bedtools/"
+SRC_URI="http://bedtools.googlecode.com/files/BEDTools.v${PV}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE=""
+
+S="${WORKDIR}/BEDTools-Version-${PV}"
+
+src_prepare() {
+	filter-ldflags -Wl,--as-needed
+	sed -i \
+		-e '/export CXXFLAGS/ d' \
+		-e '/export CXX/ d' \
+		Makefile || die
+}
+
+src_install() {
+	dobin bin/*
+	dodoc README* RELEASE_HISTORY
+	insinto /usr/share/${PN}
+	doins -r genomes
+}
-- 
cgit v1.2.3-65-gdbad