diff options
| -rw-r--r-- | sci-biology/qrna/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/qrna/qrna-2.0.3c.ebuild | 30 | ||||
| -rw-r--r-- | sci-biology/readseq/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/readseq/readseq-19930201.ebuild | 8 | ||||
| -rw-r--r-- | sci-biology/rnaview/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/rnaview/rnaview-20040713.ebuild | 18 |
6 files changed, 44 insertions, 33 deletions
diff --git a/sci-biology/qrna/ChangeLog b/sci-biology/qrna/ChangeLog index 590d7c1381dd..8d08abf918d1 100644 --- a/sci-biology/qrna/ChangeLog +++ b/sci-biology/qrna/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/qrna # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.10 2006/01/04 23:31:45 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.11 2006/01/21 18:08:49 ribosome Exp $ + + 21 Jan 2006; Olivier Fisette <ribosome@gentoo.org> qrna-2.0.3c.ebuild: + Ebuild clean-up. 04 Jan 2006; Olivier Fisette <ribosome@gentoo.org> qrna-2.0.3c.ebuild: Do not depend on "virtual/libc" (package not in system target). diff --git a/sci-biology/qrna/qrna-2.0.3c.ebuild b/sci-biology/qrna/qrna-2.0.3c.ebuild index 02d8e3506552..17e2339df8a5 100644 --- a/sci-biology/qrna/qrna-2.0.3c.ebuild +++ b/sci-biology/qrna/qrna-2.0.3c.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2006 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild,v 1.5 2006/01/04 23:31:45 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild,v 1.6 2006/01/21 18:08:49 ribosome Exp $ inherit toolchain-funcs @@ -22,33 +22,33 @@ src_compile () { sed -e "s/CC = gcc/CC = $(tc-getCC)/" \ -e "s/CFLAGS = -g -O2/CFLAGS = ${CFLAGS}/" \ -i squid02/Makefile - cd ${S}/squid + cd "${S}"/squid emake || die - cd ${S}/squid02 + cd "${S}"/squid02 emake || die - cd ${S}/src + cd "${S}"/src emake || die } src_install () { - cd ${S}/src - dobin cfgbuild eqrna eqrna_sample main rnamat_main shuffle - cd ${S}/squid02 + cd "${S}"/src + dobin cfgbuild eqrna eqrna_sample main rnamat_main shuffle || die + cd "${S}"/squid02 dobin afetch alistat compalign compstruct revcomp seqsplit seqstat \ - sfetch shuffle sindex sreformat translate weight - cd ${S} - dobin scripts/* + sfetch shuffle sindex sreformat translate weight || die + cd "${S}" + dobin scripts/* || die - newdoc 00README + newdoc 00README || die insinto /usr/share/doc/${PF} - doins documentation/* + doins documentation/* || die insinto /usr/share/${PN}/data - doins lib/* + doins lib/* || die insinto /usr/share/${PN}/demos - doins Demos/* + doins Demos/* || die # Sets the path to the QRNA data files. insinto /etc/env.d - doins ${FILESDIR}/26qrna + doins "${FILESDIR}"/26qrna || die } diff --git a/sci-biology/readseq/ChangeLog b/sci-biology/readseq/ChangeLog index e74485fcaa76..56069d7b446b 100644 --- a/sci-biology/readseq/ChangeLog +++ b/sci-biology/readseq/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/readseq -# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/readseq/ChangeLog,v 1.3 2005/11/10 19:35:41 dang Exp $ +# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/readseq/ChangeLog,v 1.4 2006/01/21 18:09:40 ribosome Exp $ + + 21 Jan 2006; Olivier Fisette <ribosome@gentoo.org> + readseq-19930201.ebuild: + Ebuild clean-up. 10 Nov 2005; <dang@gentoo.org> readseq-19930201.ebuild: Marked ~amd64 diff --git a/sci-biology/readseq/readseq-19930201.ebuild b/sci-biology/readseq/readseq-19930201.ebuild index 052e35cecf83..89f848ebf338 100644 --- a/sci-biology/readseq/readseq-19930201.ebuild +++ b/sci-biology/readseq/readseq-19930201.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2005 Gentoo Foundation +# Copyright 1999-2006 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/readseq/readseq-19930201.ebuild,v 1.2 2005/11/10 19:35:41 dang Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/readseq/readseq-19930201.ebuild,v 1.3 2006/01/21 18:09:40 ribosome Exp $ DESCRIPTION="Reads and writes nucleic/protein sequences in various formats." SRC_URI="mirror://debian/pool/main/r/readseq/readseq_1.orig.tar.gz" @@ -18,6 +18,6 @@ src_compile() { } src_install() { - dobin readseq - dodoc Readme Readseq.help + dobin readseq || die + dodoc Readme Readseq.help || die } diff --git a/sci-biology/rnaview/ChangeLog b/sci-biology/rnaview/ChangeLog index bb50324b04cf..acee81d8e40c 100644 --- a/sci-biology/rnaview/ChangeLog +++ b/sci-biology/rnaview/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/rnaview -# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rnaview/ChangeLog,v 1.5 2005/05/13 01:16:49 ribosome Exp $ +# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rnaview/ChangeLog,v 1.6 2006/01/21 18:11:39 ribosome Exp $ + + 21 Jan 2006; Olivier Fisette <ribosome@gentoo.org> + rnaview-20040713.ebuild: + Ebuild clean-up. *rnaview-20040713 (13 May 2005) diff --git a/sci-biology/rnaview/rnaview-20040713.ebuild b/sci-biology/rnaview/rnaview-20040713.ebuild index b6187c2070ae..c878e495ccb8 100644 --- a/sci-biology/rnaview/rnaview-20040713.ebuild +++ b/sci-biology/rnaview/rnaview-20040713.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2005 Gentoo Foundation +# Copyright 1999-2006 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rnaview/rnaview-20040713.ebuild,v 1.1 2005/05/13 01:16:49 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rnaview/rnaview-20040713.ebuild,v 1.2 2006/01/21 18:11:39 ribosome Exp $ inherit toolchain-funcs @@ -15,7 +15,7 @@ IUSE="" src_unpack() { unpack ${A} - cd ${S} + cd "${S}" sed -e "s/CC = cc/CC = $(tc-getCC)/" \ -e "s/CFLAGS =/CFLAGS = ${CFLAGS}/" \ -i Makefile || die @@ -24,16 +24,16 @@ src_unpack() { src_compile() { make clean make || die - cd ${S}/rnaml2ps + cd "${S}"/rnaml2ps make clean make || die - cd ${S}/test + cd "${S}"/test rm '.#t' } src_install() { - dobin bin/rnaview rnaml2ps/rnaml2ps - dodoc README - mkdir -p ${D}/usr/share/${PN} - cp -r BASEPARS test ${D}/usr/share/${PN} + dobin bin/rnaview rnaml2ps/rnaml2ps || die + dodoc README || die + mkdir -p "${D}"/usr/share/${PN} + cp -r BASEPARS test "${D}"/usr/share/${PN} } |