diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2012-01-04 03:41:51 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2012-01-04 03:41:51 +0000 |
| commit | b7349ec3a874a535740737c620ccb3e420f70e06 (patch) | |
| tree | 5d294843c45ef9ae41da3ef42a931d06d527a7eb /sci-biology/picard | |
| parent | dev-util/cpptest: Remove .la files (diff) | |
| download | gentoo-2-b7349ec3a874a535740737c620ccb3e420f70e06.tar.gz gentoo-2-b7349ec3a874a535740737c620ccb3e420f70e06.tar.bz2 gentoo-2-b7349ec3a874a535740737c620ccb3e420f70e06.zip | |
New package, ebuild written by me
(Portage version: 2.2.0_alpha74/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/picard')
| -rw-r--r-- | sci-biology/picard/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/picard/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/picard/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/picard/picard-1.58.ebuild | 38 |
4 files changed, 60 insertions, 0 deletions
diff --git a/sci-biology/picard/ChangeLog b/sci-biology/picard/ChangeLog new file mode 100644 index 000000000000..2bc632b203ca --- /dev/null +++ b/sci-biology/picard/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/picard +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/picard/ChangeLog,v 1.1 2012/01/04 03:41:51 weaver Exp $ + +*picard-1.58 (04 Jan 2012) + + 04 Jan 2012; Andrey Kislyuk <weaver@gentoo.org> +picard-1.58.ebuild, + +metadata.xml: + New package, ebuild written by me + diff --git a/sci-biology/picard/Manifest b/sci-biology/picard/Manifest new file mode 100644 index 000000000000..6452a9df586e --- /dev/null +++ b/sci-biology/picard/Manifest @@ -0,0 +1,3 @@ +EBUILD picard-1.58.ebuild 1047 RMD160 7ee61ac673f0985053a6724dfc4d54a434a8e4a4 SHA1 0c5cbb83eef8a97fd5b84532885b969dd6bfca0b SHA256 6a564049e901b6dbbc7a82147e0ae4e5df8cab88aa37ff9d76e7fa2cf751bb49 +MISC ChangeLog 272 RMD160 ba55a89e256389f429b870b1f73cba1293d8c4a4 SHA1 1036d31fcf98a0d1157200191c428b1d6c2a9d7a SHA256 bef20eb3b2478ce236a96f9338b7f4320a0e8f083bb7fea6ee2c00ad5553893f +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/picard/metadata.xml b/sci-biology/picard/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/picard/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/picard/picard-1.58.ebuild b/sci-biology/picard/picard-1.58.ebuild new file mode 100644 index 000000000000..0da91b9509eb --- /dev/null +++ b/sci-biology/picard/picard-1.58.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/picard/picard-1.58.ebuild,v 1.1 2012/01/04 03:41:51 weaver Exp $ + +EAPI=4 + +#ESVN_REPO_URI="https://picard.svn.sourceforge.net/svnroot/picard/trunk" +ESVN_REPO_URI="https://picard.svn.sourceforge.net/svnroot/picard/tags/${PV}" + +EANT_BUILD_TARGET="all" +JAVA_ANT_REWRITE_CLASSPATH="true" +EANT_NEEDS_TOOLS="true" +WANT_ANT_TASKS="ant-apache-bcel" + +inherit subversion java-pkg-2 java-ant-2 + +DESCRIPTION="Java-based command-line utilities that manipulate SAM files" +HOMEPAGE="http://picard.sourceforge.net/" +SRC_URI="" +LICENSE="Apache-2.0" +SLOT="0" +IUSE="" +KEYWORDS="~amd64" + +COMMON_DEPS="" +DEPEND=">=virtual/jdk-1.6 + dev-java/ant-apache-bcel:0 + app-arch/zip + ${COMMON_DEPS}" +RDEPEND=">=virtual/jre-1.6 + ${COMMON_DEPS}" + +src_install() { + cd dist + for i in *-${PV}.jar; do java-pkg_newjar $i ${i/-${PV}/}; rm $i; done + java-pkg_dojar *.jar + for i in *.jar; do java-pkg_dolauncher ${i/.jar/} --jar $i; done +} |